PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc02g080730.1.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

G2-like

Protein Properties

Length: 270aa MW: 30691.4 Da PI: 10.3417

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc02g080730.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.6	5e-32	25	78	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWt +LH+rFv+av++LGG ++AtPk +l++m+vkg+t++h+kSHLQ+YR+ Solyc02g080730.1.1 25 PRLRWTDDLHRRFVHAVDHLGGVDRATPKMVLQIMNVKGVTISHIKSHLQMYRS 78 8****************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.518	21	81	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.8E-30	22	79	IPR009057	Homeodomain-like
SuperFamily	SSF46689	6.81E-16	23	79	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.6E-24	25	78	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence Send to blast
MELGNNNSDK SSEFFIRAYV KPKMPRLRWT DDLHRRFVHA VDHLGGVDRA TPKMVLQIMN 60 VKGVTISHIK SHLQMYRSLK HQEMQAEAAN GRKRNRIDAS DSMNNLWANL VHRYNHINGK 120 AAVIDGSDQM NFPQGNLVNG YNHIKGKAAM FDGSNQMNFP QGNLIHCYNH NNRKAPIFNG 180 SNQMNISQGN LVHCYNHNNG KAPIINGSNQ MNFPQGNLVQ RYNHNNGKSV FDGHLNPTVT 240 TNYLEKIASS STVFPPPWFV SFFFSSFFLX

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-18	26	82	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-18	26	82	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-18	26	82	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-18	26	82	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-18	26	82	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-18	26	82	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-18	26	82	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-18	26	82	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc02g080730.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC215407	0.0	Solanum lycopersicum chromosome 2 clone C02HBa0167J21, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027770015.1	1e-135	two-component response regulator ORR24-like
TrEMBL	A0A3Q7F5V8	1e-137	A0A3Q7F5V8_SOLLC; Uncharacterized protein
STRING	Solyc02g080730.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13843	4	12
Representative plant	OGRP285	15	123

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	9e-28	G2-like family protein

Link Out ? help Back to Top
Phytozome	Solyc02g080730.1.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]