PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc02g079020.2.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 1044aa    MW: 114546 Da    PI: 6.1573
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc02g079020.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.52.9e-19321420198
                         EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                         f+k l+ sd+++ grlvlpkk+ae++   ++++e+  l+++d++g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++ 
  Solyc02g079020.2.1 321 FEKMLSASDAGRIGRLVLPKKCAEAYfpPISNPEGLPLKMQDLKGKEWMFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRIE- 409
                         89**************************444556667***************9989999999***9.********************887. PP

                         SEE..EEEEE- CS
                  B3  88 sefelvvkvfr 98 
                          e++lv++ ++
  Solyc02g079020.2.1 410 PEGKLVMGCRK 420
                         56656665554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.8E-30317421IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.31E-19318416IPR015300DNA-binding pseudobarrel domain
CDDcd100176.66E-23319420No hitNo description
PfamPF023622.4E-16321420IPR003340B3 DNA binding domain
PROSITE profilePS5086311.096321422IPR003340B3 DNA binding domain
SMARTSM010196.6E-23321421IPR003340B3 DNA binding domain
PROSITE profilePS5105013.876575625IPR011124Zinc finger, CW-type
PfamPF074964.2E-10580622IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1044 aa     Download sequence    Send to blast
MSSSAAASGN VCFNSNCKEF VEKTRKGWRR RTGEFAELCD RCGSAYDDGK FCDAFHLNSS  60
GWRSCESCGK QIHCGCIVSF HTFVLLDAGG IECIACARKS FILPERIKDV NNWNPIAGSG  120
PVPWRQAPSL FNGSTNQNEL QHKAPFPEAT VSIDRLSLGE RPFALLSDNN RKDSCEKLMN  180
GKLKIGVPGT PEDGYAGSNR DEAHKSCLSA PWQSSYANSE LSAPSFCLTV GSASKNEPTV  240
HSKVSVSVPQ KTTLSIPLPL GKQLGGHATV DSAGETQVKS SKIRGDGRGK NQLLPRYWPR  300
ITDQELRRLS EDSNSVITPL FEKMLSASDA GRIGRLVLPK KCAEAYFPPI SNPEGLPLKM  360
QDLKGKEWMF QFRFWPNNNS RMYVLEGVTP CIQSMQLQAG DTVTFSRIEP EGKLVMGCRK  420
ASNILTADQG SEACSNGNGV ATNGNASTKH TKSSEEVLAN STKKGSSSTT LVAATSARAE  480
IKMSDDLVNE SLGTNRPIRC KRKGSTMGSK RKRMRIDNDN LVELKVTVVQ AQGLMRPPSS  540
GAPTVIVIEG CEFEEYEQED APIIGRPTIP HMDQLGEKIQ WVQCEDCFKW RKVPDNVDLP  600
SRWTCSDNSC DPERSVCSAV QELTADHLRD LLPHINKASK KRKASKQEMD LVETLDGLDA  660
LAHLAILEEG ETLPASPQAT TKHPRHRPGC TCIVCIQPPS GKGPKHKQSC DCNVCKSVKR  720
RFKTLMMKRE KKLSEKEAEA TCQKLQPQSA GQLLDADDIQ EPIDDAVHSS PQHEELNIEG  780
SVDPNYLNEK KSSVEDPNYL DEKKSSVDDT NYLSEKISSV DDPSYLNEKE SSVDDPNILN  840
EKKSSVDDPN CLNEKKSAVD DPNYVDERKS SVDDPNCLKE KKSSASPFKG EFDLNAKPDR  900
DDELSPGSDS GSMMRMIKRA AEQYVRHCDN GSSVGNQRDG DGAGETNPGN CVIVSGSHQA  960
DVDHNRPLPI SAAASLAPND QLHFAMAASM SETHKFWESN GDLNLEIVLE EQPLVTERRV  1020
LSIVYMVVSL LDLIWDSKLV GLD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A1e-622994232126B3 domain-containing transcription repressor VAL1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.252270.0flower| fruit
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc02g079020.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2154410.0Solanum lycopersicum chromosome 2 clone C02HBa0329G05, complete sequence
GenBankAC2154720.0Solanum lycopersicum chromosome 2 clone C02SLm0019I01, complete sequence
GenBankAC2154910.0Solanum lycopersicum chromosome 2 clone C02SLm0114O11, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010316688.10.0B3 domain-containing protein Os07g0563300 isoform X3
SwissprotQ0D5G41e-175Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A1U8FW700.0A0A1U8FW70_CAPAN; B3 domain-containing protein Os07g0563300 isoform X3
STRINGSolyc02g079020.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA71282126
Representative plantOGRP12361446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30470.11e-152high-level expression of sugar-inducible gene 2
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]