PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc02g077660.2.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

HB-other

Protein Properties

Length: 1679aa MW: 188770 Da PI: 5.9838

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc02g077660.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.2	1.4e-18	24	79	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t+ qle+Le++++++ yps++ r+eL++klgLt+rq ++WF+ rR k+k+ Solyc02g077660.2.1 24 PKRQMKTPFQLETLERVYAMETYPSEAIRAELSEKLGLTDRQLQMWFCHRRLKDKN 79 69***************************************************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.27E-16	12	79	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.3E-17	12	79	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.034	20	80	IPR001356	Homeobox domain
SMART	SM00389	7.7E-18	22	84	IPR001356	Homeobox domain
Pfam	PF00046	3.7E-16	24	78	IPR001356	Homeobox domain
CDD	cd00086	4.04E-14	25	81	No hit	No description
SMART	SM00571	6.4E-18	508	567	IPR018501	DDT domain
PROSITE profile	PS50827	15.152	508	567	IPR018501	DDT domain
Pfam	PF02791	1.6E-14	510	564	IPR018501	DDT domain
Pfam	PF05066	1.2E-12	689	756	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	5.6E-6	873	916	IPR028942	WHIM1 domain
Pfam	PF15613	3.7E-14	1044	1116	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1679 aa Download sequence Send to blast
MDGGSDGEGN RNLIQSSSEG PKKPKRQMKT PFQLETLERV YAMETYPSEA IRAELSEKLG 60 LTDRQLQMWF CHRRLKDKNT SGGTEKKPRT GGTGGKRNLP ESPREDLVVA EAASDRGSGS 120 VSRSGSGSGS SRFDNGDDMP APSIRSYESP RRAMERRVIA CIEAQLGEPL RDDGPIIGVE 180 FDELPPGAFG IPIDLEERTD HYRQSFDCKL YGQYDAKVNV GSALSLSPVL TNGHREPAEP 240 KIVSDKYGQI AAPYPYDSSV DCPSKNMATM QRNGHFVREY GVEGQSIGMM SQQSRQRRFL 300 SPSRDNEFVP GNEDMLQLDR KRKSEEFGMG REVQVNEKRM RKELEKQDLL RRKMEEQMKK 360 DMEKQDRERK KEEQRLMREQ QRKEERFQRE EKREMERREK FLQRELVRVE RKKQKDELRK 420 EKEAAKQKAA MEKAMARRIA KESMELIEDE RLELMDLAAS SKGLPSIASL NYDTLQNLES 480 FRESLCEFPP KSVQLKKPFS VEPWIASDDN VGNLLMAWRF CLNFADILGL WPFTLDEFLQ 540 AFHDYDSRLL AEIQIALLKL IIKDIEDVAR TPSGGPGTNQ YSAVNPEGGH PQIVEGAYLW 600 GFDIRSWQRL LNPLTWSEVL RQFALSAGFG PPLKKKRERT CLNDSDETKG CEDIVSNLRS 660 GSAALNAVAI MQEKGHMSQR KSRHRLTPGT VKFAAYHVLA LEGDKGLNVL DIAERIQKSG 720 LRDLSTSKTP EASISVALSR DPILFERIAP STYNVRLAFR KDPADADAII SAAKEKIQRY 780 ANGFLSGQNV EDEERDDDSE GEGDVAEGPE VDDLGTSYGA NKNNEQSSLL DTCLVNGKSK 840 LSDEIGQQIG VDVVGIAVSN PSQGCSEIDE TKAGEPWVQG LAEGEYSDLC VEERLSALIA 900 LIGIANEGNS IRAILEDRLD AANALKKQMW AESQLDKRRL KEETINKFND SSFNVVVEGS 960 QSPLGYPNNK NHGTSPTTLV KDDSAGIVDN LQNHFESIPA EKSSAAQETF VGQFAVPSGN 1020 TAERSRMQLK SFIGHKAEEM YVYRSLPLGQ DRRRNRYWLF VASGSSEDPG SGRIFVESPH 1080 GCWKLIDTEE AFDCLLASLD TRGVRESHLH IMLQKIEGPF KGRARQNMSC GASSNPTSGV 1140 SADSPGSAIY GVSSDSWETS SSFKIELGRT EEEKKNALQR YQVFQIWMWK ECLSSSILCA 1200 MRYGKKRCLP LLGICGHCLD SYLSEEGICP SCNKMNCEVD MNGKFIEQAM DSMDNLKIDY 1260 NNLVVSNACP VRVRLMKAVL SFTEVCVPYE ALQSSWTEDC RKTWGLKLQN SSSPEDLLQI 1320 LTQLEGVINR DYLSADYETA QELMGLCALS RKTALESTYP EPVPQLPWIP QTTSAVALRL 1380 LELDSSISYD PQQKTEAELK NKVDCLPKPS LGYASLKDPQ KIEATVMDHG LMREENWDYL 1440 NNMPSSSRSR QVVRGRGGSR PRGKLQKGTT SKQPESGRTV VRPSETLTQV LIKQGETHGQ 1500 RHVRGRRTVR KRRIEQKIVE EAQPDYLGDR SSRLSLVVSP RKHVTEEFDM NMEGIEATND 1560 NSISMEAMRI RLFLPVMELK TTMTMKMMMT TTTLIDTEAM VKIWEDMLTW MTTQIEMGMS 1620 MRIKSRALQS LKIIVIEVAK IFVGLDNCNI ALMVDRQNTE VQCDAFVLLL RNFGILLR*

Sequence ? help Back to Top

Protein Sequence Length: 1679 aa Download sequence Send to blast

MDGGSDGEGN RNLIQSSSEG PKKPKRQMKT PFQLETLERV YAMETYPSEA IRAELSEKLG  60
LTDRQLQMWF CHRRLKDKNT SGGTEKKPRT GGTGGKRNLP ESPREDLVVA EAASDRGSGS  120
VSRSGSGSGS SRFDNGDDMP APSIRSYESP RRAMERRVIA CIEAQLGEPL RDDGPIIGVE  180
FDELPPGAFG IPIDLEERTD HYRQSFDCKL YGQYDAKVNV GSALSLSPVL TNGHREPAEP  240
KIVSDKYGQI AAPYPYDSSV DCPSKNMATM QRNGHFVREY GVEGQSIGMM SQQSRQRRFL  300
SPSRDNEFVP GNEDMLQLDR KRKSEEFGMG REVQVNEKRM RKELEKQDLL RRKMEEQMKK  360
DMEKQDRERK KEEQRLMREQ QRKEERFQRE EKREMERREK FLQRELVRVE RKKQKDELRK  420
EKEAAKQKAA MEKAMARRIA KESMELIEDE RLELMDLAAS SKGLPSIASL NYDTLQNLES  480
FRESLCEFPP KSVQLKKPFS VEPWIASDDN VGNLLMAWRF CLNFADILGL WPFTLDEFLQ  540
AFHDYDSRLL AEIQIALLKL IIKDIEDVAR TPSGGPGTNQ YSAVNPEGGH PQIVEGAYLW  600
GFDIRSWQRL LNPLTWSEVL RQFALSAGFG PPLKKKRERT CLNDSDETKG CEDIVSNLRS  660
GSAALNAVAI MQEKGHMSQR KSRHRLTPGT VKFAAYHVLA LEGDKGLNVL DIAERIQKSG  720
LRDLSTSKTP EASISVALSR DPILFERIAP STYNVRLAFR KDPADADAII SAAKEKIQRY  780
ANGFLSGQNV EDEERDDDSE GEGDVAEGPE VDDLGTSYGA NKNNEQSSLL DTCLVNGKSK  840
LSDEIGQQIG VDVVGIAVSN PSQGCSEIDE TKAGEPWVQG LAEGEYSDLC VEERLSALIA  900
LIGIANEGNS IRAILEDRLD AANALKKQMW AESQLDKRRL KEETINKFND SSFNVVVEGS  960
QSPLGYPNNK NHGTSPTTLV KDDSAGIVDN LQNHFESIPA EKSSAAQETF VGQFAVPSGN  1020
TAERSRMQLK SFIGHKAEEM YVYRSLPLGQ DRRRNRYWLF VASGSSEDPG SGRIFVESPH  1080
GCWKLIDTEE AFDCLLASLD TRGVRESHLH IMLQKIEGPF KGRARQNMSC GASSNPTSGV  1140
SADSPGSAIY GVSSDSWETS SSFKIELGRT EEEKKNALQR YQVFQIWMWK ECLSSSILCA  1200
MRYGKKRCLP LLGICGHCLD SYLSEEGICP SCNKMNCEVD MNGKFIEQAM DSMDNLKIDY  1260
NNLVVSNACP VRVRLMKAVL SFTEVCVPYE ALQSSWTEDC RKTWGLKLQN SSSPEDLLQI  1320
LTQLEGVINR DYLSADYETA QELMGLCALS RKTALESTYP EPVPQLPWIP QTTSAVALRL  1380
LELDSSISYD PQQKTEAELK NKVDCLPKPS LGYASLKDPQ KIEATVMDHG LMREENWDYL  1440
NNMPSSSRSR QVVRGRGGSR PRGKLQKGTT SKQPESGRTV VRPSETLTQV LIKQGETHGQ  1500
RHVRGRRTVR KRRIEQKIVE EAQPDYLGDR SSRLSLVVSP RKHVTEEFDM NMEGIEATND  1560
NSISMEAMRI RLFLPVMELK TTMTMKMMMT TTTLIDTEAM VKIWEDMLTW MTTQIEMGMS  1620
MRIKSRALQS LKIIVIEVAK IFVGLDNCNI ALMVDRQNTE VQCDAFVLLL RNFGILLR*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Highly expressed in growing tissues such as inflorescence and flower meristems, young leaves and floral organs. Expressed in roots, rosette and cauline leaves, stems, flowers, inflorescences and siliques. {ECO:0000269\|PubMed:22694359}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269\|PubMed:22694359, ECO:0000269\|PubMed:23872538}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc02g077660.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004232922.1	0.0	homeobox-DDT domain protein RLT1
Swissprot	Q9FFH1	0.0	RLT2_ARATH; Homeobox-DDT domain protein RLT2
TrEMBL	A0A3Q7F5I7	0.0	A0A3Q7F5I7_SOLLC; Uncharacterized protein
STRING	Solyc02g077660.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2142	23	52
Representative plant	OGRP1577	16	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28420.1	0.0	homeobox-1

Link Out ? help Back to Top
Phytozome	Solyc02g077660.2.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]