PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc02g077590.1.1
Common NameLOC101249431
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family HD-ZIP
Protein Properties Length: 180aa    MW: 20805.3 Da    PI: 7.5708
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc02g077590.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.87.6e-181669356
                        --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                        ++ +++++q + Le  F +n++++ +++ +LA++lgL+ rq+ +W+qN+Ra++k
  Solyc02g077590.1.1 16 HKKRLNQDQMRLLEISFSSNNKLDSDRKFQLAQELGLPPRQIAIWYQNKRARWK 69
                        67789************************************************9 PP
2HD-ZIP_I/II108.83.8e-3516107293
         HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                         +k+rl+++q++lLE sF++++kL+++rK +la+eLgl prq+a+W+qn+RAR+k++ lE+dy++L++++d+  e+ne+L+ eve+Lr+el+
  Solyc02g077590.1.1  16 HKKRLNQDQMRLLEISFSSNNKLDSDRKFQLAQELGLPPRQIAIWYQNKRARWKSQSLEVDYKTLQQRLDNALEDNEKLKLEVERLRKELN 106
                         69**************************************************************************************997 PP

         HD-ZIP_I/II  93 e 93 
                         +
  Solyc02g077590.1.1 107 K 107
                         5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.03E-16972IPR009057Homeodomain-like
SMARTSM003891.0E-141475IPR001356Homeobox domain
PfamPF000464.2E-151669IPR001356Homeobox domain
CDDcd000861.77E-131672No hitNo description
PROSITE profilePS5007115.0941771IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.1E-171878IPR009057Homeodomain-like
PRINTSPR000312.8E-54251IPR000047Helix-turn-helix motif
PROSITE patternPS0002704669IPR017970Homeobox, conserved site
PRINTSPR000312.8E-55167IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009637Biological Processresponse to blue light
GO:0009646Biological Processresponse to absence of light
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MDFLSCQTQK IHLKCHKKRL NQDQMRLLEI SFSSNNKLDS DRKFQLAQEL GLPPRQIAIW  60
YQNKRARWKS QSLEVDYKTL QQRLDNALED NEKLKLEVER LRKELNKNQE VLLGFNTTTT  120
NNYSSISSSC DEVGSTSCLQ LHDQSKHNHL DKDFYACLIG DEGHFGTHDG HNFFASSLS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc02g077590.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015065114.11e-126homeobox-leucine zipper protein ATHB-52-like
TrEMBLA0A3Q7F4431e-129A0A3Q7F443_SOLLC; Uncharacterized protein
STRINGSolyc02g077590.1.11e-130(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27152453
Representative plantOGRP12916189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53980.12e-24homeobox protein 52
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]