PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc02g076670.2.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

G2-like

Protein Properties

Length: 339aa MW: 39366.3 Da PI: 9.7985

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc02g076670.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.4	5.9e-32	60	113	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH++Fv+a+e+LGG+e+AtPk +l++m+v gL+++hvkSHLQ+YR+ Solyc02g076670.2.1 60 PRLRWTPDLHRSFVHAIERLGGQERATPKLVLQMMNVRGLSIAHVKSHLQMYRS 113 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.2E-29	56	114	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.258	56	116	IPR017930	Myb domain
SuperFamily	SSF46689	9.14E-15	59	114	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.8E-23	60	115	IPR006447	Myb domain, plants
Pfam	PF00249	1.7E-8	61	112	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence Send to blast
MENASSSSIN LNEDNKGKLE EEEEVIEVED SNEKEIEGNY NTSSDVEKKN VRQYVRSKLP 60 RLRWTPDLHR SFVHAIERLG GQERATPKLV LQMMNVRGLS IAHVKSHLQM YRSKKLDESG 120 QVLGHGNNRS IMQGRSYFFR SHLGGQRYNP IQDFKMKNGA IVLARNFNYD NHALKSHSFS 180 RPSYQAKNIF SRYLSWSSDN QGGLVNSKFQ KGEDLLRVKS WQTPRQVVIE QNGVMPIRST 240 QFLEQKKFIP NQWEEKTAKN SHFLLQQNLG QPFSKWNCRN NALDQNLVTP CRIEMKEDKN 300 GFEEKEWLPD LQLRLSRSSD DKNEKRMDQS DINTMLSL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	5e-18	61	115	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	5e-18	61	115	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	4e-18	61	115	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	4e-18	61	115	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	4e-18	61	115	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	4e-18	61	115	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	5e-18	61	115	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	5e-18	61	115	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	5e-18	61	115	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	5e-18	61	115	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	5e-18	61	115	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	5e-18	61	115	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.11089	0.0	callus\| leaf\| root

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc02g076670.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004233059.1	0.0	two-component response regulator ARR18
TrEMBL	A0A3Q7F340	0.0	A0A3Q7F340_SOLLC; Uncharacterized protein
STRING	Solyc02g076670.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5516	23	34
Representative plant	OGRP285	15	123

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	1e-37	G2-like family protein

Link Out ? help Back to Top
Phytozome	Solyc02g076670.2.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]