PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc02g072190.2.1
Common NameLOC101253151
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family WRKY
Protein Properties Length: 309aa    MW: 34384.1 Da    PI: 6.3673
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc02g072190.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.81.4e-3077135259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp+++++tY+ eHnh+
  Solyc02g072190.2.1  77 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRADPNMLVVTYSCEHNHP 135
                         69*************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-3173137IPR003657WRKY domain
SuperFamilySSF1182902.35E-2675137IPR003657WRKY domain
SMARTSM007744.2E-3676136IPR003657WRKY domain
PROSITE profilePS5081132.40977137IPR003657WRKY domain
PfamPF031063.9E-2678135IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MDGRFNNFFV SEQEDSENSP ENSSDSPRSG LFNDNKMITS TSSPKRSRRS IEKRVVSVPI  60
KEIEGSKMKG EISMPPSDSW AWRKYGQKPI KGSPYPRGYY RCSSSKGCPA RKQVERSRAD  120
PNMLVVTYSC EHNHPWPASR NNQHNHRTTT NTSCIINNNN NTKTKMKTIV SLTAAATTTT  180
TTSTTTSNIA VSEEKVTGDF TRPSEPNSDE KFVNLGESSS SLISANEFGW FSDLIECTST  240
TMLESPILTQ VDCDIDMSST LTMREEDVSL FADLGELPEC STVFGRGMME RDEERRRHSL  300
TSWCGTTG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B3e-2266137379Disease resistance protein RRS1
5w3x_D3e-2266137379Disease resistance protein RRS1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.230750.0leaf| seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc02g072190.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004233062.10.0probable WRKY transcription factor 65 isoform X1
TrEMBLA0A3Q7F4R10.0A0A3Q7F4R1_SOLLC; Uncharacterized protein
STRINGSolyc02g072190.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA64752333
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58710.21e-53WRKY DNA-binding protein 69
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]