PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc02g072060.1.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

HSF

Protein Properties

Length: 340aa MW: 38413.1 Da PI: 7.9591

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc02g072060.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	87.2	2.2e-27	40	130	2	101
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 Fl k+ye+++d+e++ l++w++++++f+++d+++f +vLpkyFkhsn++SF+ QLn Y F+kv + + e+ +++F++gkk+ Solyc02g072060.1.1 40 FLVKTYEMVDDPETDPLVHWTSSKTTFLITDPNKFCVEVLPKYFKHSNLSSFIYQLNNYRFRKVCSYK---------CEYGNPWFRAGKKH 121 9**************************************************************999.........67******** PP XXXXXXXXX CS HSF_DNA-bind 93 llekikrkk 101 l++ik + Solyc02g072060.1.1 122 WLKNIKSRI 130 ****986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	2.1E-29	34	124	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	1.31E-29	35	128	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	1.6E-37	36	129	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	9.5E-16	40	63	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	7.1E-25	40	128	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	9.5E-16	78	90	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	9.5E-16	91	103	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence Send to blast
MEINIQENGG KGGRGRRGGG AVGRGRPRLT GLRGNSPPPF LVKTYEMVDD PETDPLVHWT 60 SSKTTFLITD PNKFCVEVLP KYFKHSNLSS FIYQLNNYRF RKVCSYKCEY GNPWFRAGKK 120 HWLKNIKSRI QLSKENNTQQ GSHSPRVDLV SNNLEEELEK LRNDHISLRV ELQKLKDGQE 180 NMRSFFPMLP GCGKEKEIRN IMKLLLEKSE VRGDSSSDDT TKRTRLVESP DRVAGSVQDG 240 IGQTSNSAGG SVSSNEKQKE EATARNAKNR EFWEKLFEDE SESKNEGAEE SEQELNRLKA 300 MAKIEEMVES KIAMEGESLI AKAAASLNDE TEAYLQLWT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	1e-20	38	130	27	130	Heat shock factor protein 1
5d5v_B	1e-20	38	130	27	130	Heat shock factor protein 1
5d5v_D	1e-20	38	130	27	130	Heat shock factor protein 1
5hdg_A	6e-21	38	130	8	111	Heat shock factor protein 1
5hdn_A	6e-21	38	130	8	111	Heat shock factor protein 1
5hdn_B	6e-21	38	130	8	111	Heat shock factor protein 1
5hdn_C	6e-21	38	130	8	111	Heat shock factor protein 1
5hdn_D	6e-21	38	130	8	111	Heat shock factor protein 1
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	11	19	GGRGRRGGG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc02g072060.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC226521	0.0	Solanum lycopersicum chromosome 2 clone C02SLm0096H01, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019067598.1	0.0	heat stress transcription factor A-7a-like
TrEMBL	A0A3Q7F4N6	0.0	A0A3Q7F4N6_SOLLC; Uncharacterized protein
STRING	Solyc02g072060.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12970	15	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26150.1	1e-39	heat shock transcription factor A2

Link Out ? help Back to Top
Phytozome	Solyc02g072060.1.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]