PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc02g071990.2.1

Common Name

LOC101250766

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

BES1

Protein Properties

Length: 325aa MW: 34908.9 Da PI: 8.0569

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc02g071990.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	195.3	2.2e-60	2	142	1	147
DUF822 1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspe 91 ++++r ptwkErEnnkrRERrRRaiaaki+aGLR++Gnyklpk++DnneVlkALc+eAGw+ve+DGttyrkg+kp ++ +++gs s+s + Solyc02g071990.2.1 2 TSGTRLPTWKERENNKRRERRRRAIAAKIFAGLRMYGNYKLPKHCDNNEVLKALCKEAGWIVEEDGTTYRKGCKPVTRIDIGGS-VSVS-S 90 5899**********************************************************************66666554.4444.4 PP DUF822 92 sslqsslkssalaspvesysaspksssfpspssldsislasa....asllpvlsvlslvs 147 ss+q sp +sy++sp sss+psp+s+ + + ++ +sl+p+l++ls+ s Solyc02g071990.2.1 91 SSYQ--------LSPGASYNPSPVSSSIPSPVSSHYVANVQNnsdpNSLIPWLKNLSSGS 142 5667........566666666666666666666555443333345599*****98754 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	9.1E-62	3	139	IPR008540	BES1/BZR1 plant transcription factor, N-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
MTSGTRLPTW KERENNKRRE RRRRAIAAKI FAGLRMYGNY KLPKHCDNNE VLKALCKEAG 60 WIVEEDGTTY RKGCKPVTRI DIGGSVSVSS SSYQLSPGAS YNPSPVSSSI PSPVSSHYVA 120 NVQNNSDPNS LIPWLKNLSS GSSPSLSNFP HHLCIPGGSI SAPVTPPLSS PTASTPRMND 180 NWENPTANST WIQQHYPFLP SSTPPSPGRQ TPPDSGWLSG VQTPQDGPSS PTFSLVSSNP 240 FGFKEPLSNG GSRMWTPGQS GTCSPAVGPC MDQTADVPMS DAISAEFAFG SNMKGVVKPW 300 EGERIHEECI SDDLELTLGN SSTR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zd4_A	4e-24	6	77	372	443	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B	4e-24	6	77	372	443	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C	4e-24	6	77	372	443	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D	4e-24	6	77	372	443	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.12803	0.0	callus\| fruit\| leaf

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc02g071990.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC226521	0.0	Solanum lycopersicum chromosome 2 clone C02SLm0096H01, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004233053.1	0.0	BES1/BZR1 homolog protein 4 isoform X4
Refseq	XP_010316857.1	0.0	BES1/BZR1 homolog protein 4 isoform X3
Swissprot	Q9ZV88	1e-125	BEH4_ARATH; BES1/BZR1 homolog protein 4
TrEMBL	A0A3Q7FPF0	0.0	A0A3Q7FPF0_SOLLC; Uncharacterized protein
STRING	Solyc02g071990.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1984	24	64
Representative plant	OGRP1595	15	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G78700.1	1e-103	BES1/BZR1 homolog 4

Link Out ? help Back to Top
Phytozome	Solyc02g071990.2.1
Entrez Gene	101250766

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]