PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc02g070880.1.1 | ||||||||
Common Name | LOC101265299 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | bHLH | ||||||||
Protein Properties | Length: 247aa MW: 27928.1 Da PI: 5.2082 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 19.4 | 1.8e-06 | 186 | 230 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + n Er+RR ++++ L+ ++P a +++ +++L +Av+Y+ksL Solyc02g070880.1.1 186 TSNCSERKRR-KLKKMVKALKGIVPGA-----SRMNTVTVLDEAVRYLKSL 230 679999*998.7**************9.....7****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.988 | 181 | 230 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.44E-9 | 184 | 239 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.3E-9 | 186 | 240 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.3E-4 | 186 | 230 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.3E-7 | 188 | 236 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.06E-7 | 191 | 235 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MQNNYQFSPQ IQKPFVSLED QAAGGNIFDI PVPSVFDTMA LPTSFKSSVP FHGFEFRSSE 60 ACPKNFIIFD QTDYRSQIMY HPAMTSKFPY PDLNYNSTCF HDCMERKIAN NENTEVSSYL 120 KEDSDDINAL LSLEEEECEE YDEEEVSTAR TDANYGCSSP ESYSNYHCQS KKSRTSSFRE 180 SSGSSTSNCS ERKRRKLKKM VKALKGIVPG ASRMNTVTVL DEAVRYLKSL KVEVQKLGVD 240 NLKTYA* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.11546 | 0.0 | flower| fruit| leaf| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc02g070880.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC215381 | 0.0 | Solanum lycopersicum chromosome 2 clone C02HBa0091J18, complete sequence | |||
GenBank | AC215389 | 0.0 | Solanum lycopersicum chromosome 2 clone C02HBa0122F06, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004233098.1 | 0.0 | transcription factor bHLH144 | ||||
TrEMBL | A0A3Q7F267 | 0.0 | A0A3Q7F267_SOLLC; Uncharacterized protein | ||||
STRING | Solyc02g070880.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8124 | 19 | 24 | Representative plant | OGRP5968 | 5 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29950.2 | 8e-30 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc02g070880.1.1 |
Entrez Gene | 101265299 |
Publications ? help Back to Top | |||
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