PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc02g069960.2.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | NAC | ||||||||
Protein Properties | Length: 311aa MW: 35723.9 Da PI: 6.2694 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 158.5 | 2.8e-49 | 31 | 157 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.kvkaeekewyfFskrdkkyatgkrknratk.sgyWkatgkdk 90 pGfrFhPtdeelv +yL++k+e+k + l e+ik++diyk++PwdLpk + +++ekewyfF+kr +ky+++ r+nr+t sg+Wkatg d+ Solyc02g069960.2.1 31 LPGFRFHPTDEELVGFYLRRKIEKKIIGL-EIIKQIDIYKYDPWDLPKgSNNNGEKEWYFFCKRGRKYKNSLRPNRVTGgSGFWKATGIDR 120 69************************999.99***************535666889********************77669********** PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++s +g+ +glkk+Lv+y+g+a kg+kt+W mhe+rl Solyc02g069960.2.1 121 PIYS-SGKCIGLKKSLVYYRGSAGKGTKTEWQMHEFRL 157 ****.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 52.725 | 30 | 188 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.4E-52 | 30 | 188 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.4E-24 | 32 | 157 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 311 aa Download sequence Send to blast |
MEVEKISSIV TNNYYEDEDE DEDDDDDDVV LPGFRFHPTD EELVGFYLRR KIEKKIIGLE 60 IIKQIDIYKY DPWDLPKGSN NNGEKEWYFF CKRGRKYKNS LRPNRVTGGS GFWKATGIDR 120 PIYSSGKCIG LKKSLVYYRG SAGKGTKTEW QMHEFRLPVE NDKSTKHLHA NTIPQQDETW 180 TLCRILKRNV SYKKPIPDWK EVAKKQRNNS VMNMDVLSSK ICSNSSIESS PNSSQIFISF 240 STTSVVKQNT YTNTITENKH QFVSQQSSGT SSQSTTVGAA STPLDFNEWL EHGNWDELES 300 IFELSFDPLF * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-47 | 32 | 194 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-47 | 32 | 194 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-47 | 32 | 194 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-47 | 32 | 194 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 5e-47 | 32 | 194 | 22 | 174 | NAC domain-containing protein 19 |
3swm_B | 5e-47 | 32 | 194 | 22 | 174 | NAC domain-containing protein 19 |
3swm_C | 5e-47 | 32 | 194 | 22 | 174 | NAC domain-containing protein 19 |
3swm_D | 5e-47 | 32 | 194 | 22 | 174 | NAC domain-containing protein 19 |
3swp_A | 5e-47 | 32 | 194 | 22 | 174 | NAC domain-containing protein 19 |
3swp_B | 5e-47 | 32 | 194 | 22 | 174 | NAC domain-containing protein 19 |
3swp_C | 5e-47 | 32 | 194 | 22 | 174 | NAC domain-containing protein 19 |
3swp_D | 5e-47 | 32 | 194 | 22 | 174 | NAC domain-containing protein 19 |
4dul_A | 5e-47 | 32 | 194 | 19 | 171 | NAC domain-containing protein 19 |
4dul_B | 5e-47 | 32 | 194 | 19 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, root caps, cotyledons, tips and margin of young leaves, senescent regions of fully expanded leaves and floral tissues, including old sepals, petals, staments, mature anthers and pollen grains. Not detected in the abscission zone of open flowers, emerging lateral roots and root meristematic zones. {ECO:0000269|PubMed:22345491}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc02g069960.2.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC215362 | 0.0 | Solanum lycopersicum chromosome 2 clone C02HBa0027B01, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004233159.1 | 0.0 | transcription factor JUNGBRUNNEN 1-like | ||||
Swissprot | Q9SK55 | 3e-79 | NAC42_ARATH; Transcription factor JUNGBRUNNEN 1 | ||||
TrEMBL | A0A3Q7FN58 | 0.0 | A0A3Q7FN58_SOLLC; Uncharacterized protein | ||||
STRING | Solyc02g069960.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1697 | 24 | 69 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12910.1 | 6e-68 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc02g069960.2.1 |