PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc02g069720.2.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | LSD | ||||||||
Protein Properties | Length: 163aa MW: 16795.4 Da PI: 8.3793 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 26.1 | 1.4e-08 | 1 | 18 | 7 | 24 |
zf-LSD1 7 lLsYPrGApsVRCalCdt 24 +L YPrGA++V+Ca+C++ Solyc02g069720.2.1 1 MLLYPRGASNVCCAVCNA 18 699*************97 PP | |||||||
2 | zf-LSD1 | 45.4 | 1.3e-14 | 34 | 58 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+ PrGA sVRC++C+tV Solyc02g069720.2.1 34 CGGCRTLLMHPRGANSVRCSCCHTV 58 ************************9 PP | |||||||
3 | zf-LSD1 | 39.3 | 1.1e-12 | 72 | 95 | 1 | 24 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 Cg+Cr +L+YP GApsV+Ca+C+ Solyc02g069720.2.1 72 CGNCRMMLMYPCGAPSVKCAVCHY 95 **********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 8.4E-7 | 1 | 20 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 6.1E-7 | 1 | 18 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 5.2E-17 | 31 | 61 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 7.1E-13 | 34 | 58 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 2.2E-11 | 69 | 98 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 2.7E-12 | 72 | 96 | IPR005735 | Zinc finger, LSD1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000303 | Biological Process | response to superoxide | ||||
GO:0001666 | Biological Process | response to hypoxia | ||||
GO:0002240 | Biological Process | response to molecule of oomycetes origin | ||||
GO:0009626 | Biological Process | plant-type hypersensitive response | ||||
GO:0009862 | Biological Process | systemic acquired resistance, salicylic acid mediated signaling pathway | ||||
GO:0010104 | Biological Process | regulation of ethylene-activated signaling pathway | ||||
GO:0010310 | Biological Process | regulation of hydrogen peroxide metabolic process | ||||
GO:0010602 | Biological Process | regulation of 1-aminocyclopropane-1-carboxylate metabolic process | ||||
GO:0010618 | Biological Process | aerenchyma formation | ||||
GO:0043069 | Biological Process | negative regulation of programmed cell death |
Sequence ? help Back to Top |
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Protein Sequence Length: 163 aa Download sequence Send to blast |
MLLYPRGASN VCCAVCNALT PVPPPGMEMA QLICGGCRTL LMHPRGANSV RCSCCHTVNL 60 VPGPNQFAHV YCGNCRMMLM YPCGAPSVKC AVCHYITNVN AGDGRAHAPL NPPNGTATTA 120 SGSSSTAKAR SQNQTVVVQN PMSVDESGKL VSNVVVGVTT TS* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.2556 | 0.0 | cell culture| fruit| leaf| root| trichome |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc02g069720.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT013298 | 0.0 | Lycopersicon esculentum clone 134929F, mRNA sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010316974.1 | 1e-114 | protein LSD1 | ||||
Refseq | XP_010316975.1 | 1e-114 | protein LSD1 | ||||
Refseq | XP_025885110.1 | 1e-114 | protein LSD1 | ||||
Swissprot | Q6ASS2 | 8e-59 | LOL3_ORYSJ; Protein LOL3 | ||||
TrEMBL | A0A3Q7F227 | 1e-112 | A0A3Q7F227_SOLLC; Uncharacterized protein | ||||
STRING | Solyc02g069720.2.1 | 1e-113 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1679 | 24 | 67 | Representative plant | OGRP1146 | 17 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20380.7 | 1e-48 | LSD family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc02g069720.2.1 |
Publications ? help Back to Top | |||
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