PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc02g067430.2.1 | ||||||||
Common Name | LOC101253158 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | WRKY | ||||||||
Protein Properties | Length: 441aa MW: 48396.9 Da PI: 7.3354 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 91.4 | 7.2e-29 | 205 | 263 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK +g+++prsYYrC+ a Cpv+k+v+r+ ed +++++tYeg+Hnh+ Solyc02g067430.2.1 205 NDGCQWRKYGQKISRGNPCPRSYYRCSVApLCPVRKQVQRCLEDMSILITTYEGTHNHS 263 8***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.2E-30 | 189 | 265 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.07E-25 | 196 | 265 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 27.267 | 199 | 265 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.1E-34 | 204 | 264 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.8E-25 | 205 | 262 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006952 | Biological Process | defense response | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 441 aa Download sequence Send to blast |
MEKKRDNSIS SANNHEEEDV KKISKDDEFK SAIAEVNKIK LENARLKLLL QQIEKDYTSL 60 QTRFFNICQP DFKKSSGSPT CTHENIADEE ESELVSLRLG RSPSPSEYKK VDKKRSYDKT 120 IEDSPSCNDQ SNNGLKLGLD YSTGVCESEF IKPSNDPSPG PTSEVVKTVK KCDDESIKKD 180 DEVSQPNVKR ARVSVRTKCD YPTINDGCQW RKYGQKISRG NPCPRSYYRC SVAPLCPVRK 240 QVQRCLEDMS ILITTYEGTH NHSLPIEATA MASTTSAAAS MLLSGSSTSF QTSKNLPNIS 300 KTTPLYLSNS SSNPFPTITL DFTTFPTTSS FTSFNFPSNF QSGLGFLSNS LSFSSTESTT 360 MPILGSGGLN YDSTSTLPYH NNLINIGSSH KQFDTSSNKL KEDSSQQALT ETLTKAITSD 420 PSFQSVLAAA ISSMVGATKT * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 2e-22 | 191 | 265 | 1 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc02g067430.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC238478 | 3e-15 | Solanum lycopersicum chromosome 3 clone C03SLm0111H07, complete sequence | |||
GenBank | GU017421 | 3e-15 | Solanum lycopersicum WRKY72 mRNA, complete cds |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004233924.1 | 0.0 | probable WRKY transcription factor 72 | ||||
TrEMBL | A0A3Q7F087 | 0.0 | A0A3Q7F087_SOLLC; Uncharacterized protein | ||||
STRING | Solyc02g067430.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12805 | 19 | 21 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15130.1 | 1e-58 | WRKY DNA-binding protein 72 |
Link Out ? help Back to Top | |
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Phytozome | Solyc02g067430.2.1 |
Entrez Gene | 101253158 |
Publications ? help Back to Top | |||
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