PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc02g067410.1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 264aa MW: 30203.5 Da PI: 5.6571 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 55.9 | 7.4e-18 | 65 | 118 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe +++ e++ +LA+ lgL+ rq+ +WFqNrRa+ k Solyc02g067410.1.1 65 KKRRLNMEQVKALERSFEIGNKLEPERKMQLARALGLKPRQIAIWFQNRRARCK 118 456899**********************************************99 PP | |||||||
2 | HD-ZIP_I/II | 129.5 | 1.4e-41 | 64 | 155 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ekkrrl+ eqvk+LE+sFe +kLeperK++lar+Lgl+prq+a+WFqnrRAR ktkqlEkdye Lkr++d+lk++n++L++++++L++el Solyc02g067410.1.1 64 EKKRRLNMEQVKALERSFEIGNKLEPERKMQLARALGLKPRQIAIWFQNRRARCKTKQLEKDYEILKRQCDKLKSDNDALKTQNKNLHSEL 154 69***************************************************************************************99 PP HD-ZIP_I/II 92 k 92 + Solyc02g067410.1.1 155 Q 155 7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 9.84E-19 | 61 | 122 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.9E-18 | 63 | 124 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 16.163 | 64 | 120 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 4.3E-15 | 65 | 118 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.66E-15 | 65 | 121 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.5E-19 | 67 | 127 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.1E-5 | 91 | 100 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 95 | 118 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.1E-5 | 100 | 116 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 6.4E-15 | 120 | 158 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 264 aa Download sequence Send to blast |
MGFVPGAPED NELPPPFPSV YPHQEFQGIS SVLMRRAMSF DHQDSRADDI DMSDDDGSSQ 60 LLGEKKRRLN MEQVKALERS FEIGNKLEPE RKMQLARALG LKPRQIAIWF QNRRARCKTK 120 QLEKDYEILK RQCDKLKSDN DALKTQNKNL HSELQLLSLR NRESTGGGTP ILFNLNKENE 180 GSNWNNGSGD ENSTIIDVNL GRTSSTNSPH NNNNNDHVFQ TPNFKIEEQT QSHDVPEEGF 240 CNIFTNVEDQ TNYWPLPVQQ HFY* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 112 | 120 | RRARCKTKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.24381 | 0.0 | leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed predominantly in flowers, and in the cortex of the root and the stem. {ECO:0000269|PubMed:16055682}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc02g067410.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004233356.1 | 0.0 | homeobox-leucine zipper protein HAT7 | ||||
Swissprot | Q00466 | 1e-58 | HAT7_ARATH; Homeobox-leucine zipper protein HAT7 | ||||
TrEMBL | A0A3Q7FLH4 | 0.0 | A0A3Q7FLH4_SOLLC; Uncharacterized protein | ||||
STRING | Solyc02g067410.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA848 | 24 | 98 | Representative plant | OGRP129 | 16 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15150.1 | 2e-50 | homeobox 3 |
Link Out ? help Back to Top | |
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Phytozome | Solyc02g067410.1.1 |
Publications ? help Back to Top | |||
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