PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc02g065310.1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | B3 | ||||||||
Protein Properties | Length: 228aa MW: 26048.8 Da PI: 8.5923 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 53.3 | 5.1e-17 | 116 | 209 | 3 | 99 |
EE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 3 kvltpsdvlks.grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 + + ps+ ++s + l++ +fa+++ +++++s ++l+ sW v++ + ++ + ++ GW+ Fv +n+Lk+gD++vF++++ ++ + Solyc02g065310.1.1 116 SFMHPSYISRSsNHLCIMLRFARTY-IPENCS-NIMLRVAGRGSWPVTY--STGKAQAKISIGWEAFVLDNKLKVGDVCVFEVIKGTQIFM 202 44445554444678********999.344565.9***************..88888899***********************998755559 PP EEEEE-S CS B3 93 vvkvfrk 99 +v++fr+ Solyc02g065310.1.1 203 NVTIFRA 209 9999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.5E-24 | 106 | 210 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.9E-21 | 107 | 209 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.42E-16 | 112 | 208 | No hit | No description |
SMART | SM01019 | 3.7E-11 | 114 | 210 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.997 | 115 | 210 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.2E-14 | 115 | 209 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MLIFYLVEKS TFHVLHYSKK PRTNIRHFEE LSSEDEVENV EEKEDEEENV EASRKSKKVK 60 TEPKESSAID NEGCKMQSQQ SSVIYDVRKT VMDKEKAIAY QRAKATFKSK NPFFISFMHP 120 SYISRSSNHL CIMLRFARTY IPENCSNIML RVAGRGSWPV TYSTGKAQAK ISIGWEAFVL 180 DNKLKVGDVC VFEVIKGTQI FMNVTIFRAA GSMPMQETDG QFVVSFH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 8e-16 | 88 | 208 | 24 | 141 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 8e-16 | 88 | 208 | 24 | 141 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc02g065310.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC215367 | 1e-165 | Solanum lycopersicum chromosome 2 clone C02HBa0044L14, complete sequence | |||
GenBank | AC215404 | 1e-165 | Solanum lycopersicum chromosome 2 clone C02HBa0163K16, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015065637.2 | 1e-108 | B3 domain-containing protein Os11g0197600-like | ||||
TrEMBL | K4B6W5 | 1e-169 | K4B6W5_SOLLC; Uncharacterized protein | ||||
STRING | Solyc02g065310.1.1 | 1e-170 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA759 | 18 | 93 | Representative plant | OGRP1718 | 5 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 2e-18 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc02g065310.1.1 |
Publications ? help Back to Top | |||
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