PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc02g064630.2.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

MYB_related

Protein Properties

Length: 320aa MW: 34678.5 Da PI: 7.5957

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc02g064630.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	37.2	6.9e-12	5	56	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 +++WT eE+ l+ +v+++G g W+tI + R+ ++k++w+++ Solyc02g064630.2.1 5 KQKWTSEEEAALKAGVAKYGVGKWSTILKDPEfavvlRSRSNVDLKDKWRNL 56 79************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.237	1	61	IPR017930	Myb domain
SuperFamily	SSF46689	2.84E-16	2	59	IPR009057	Homeodomain-like
SMART	SM00717	3.4E-8	4	59	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.3E-14	5	56	IPR009057	Homeodomain-like
Pfam	PF00249	2.9E-8	5	56	IPR001005	SANT/Myb domain
CDD	cd11660	2.90E-21	6	56	No hit	No description
SuperFamily	SSF46785	1.14E-14	117	195	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00526	1.1E-14	117	182	IPR005818	Linker histone H1/H5, domain H15
PROSITE profile	PS51504	21.719	119	187	IPR005818	Linker histone H1/H5, domain H15
Gene3D	G3DSA:1.10.10.10	1.1E-14	122	190	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00538	3.5E-10	124	180	IPR005818	Linker histone H1/H5, domain H15

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006334	Biological Process	nucleosome assembly
GO:0031627	Biological Process	telomeric loop formation
GO:0000784	Cellular Component	nuclear chromosome, telomeric region
GO:0000786	Cellular Component	nucleosome
GO:0003691	Molecular Function	double-stranded telomeric DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence Send to blast
MGAPKQKWTS EEEAALKAGV AKYGVGKWST ILKDPEFAVV LRSRSNVDLK DKWRNLHVMA 60 SGWGSRHRGK IVSKSAQPTP KHDDSTLVSY VSENDRDIPD VKPLASTGDE LKDVGSKRPL 120 SRLDDLILES IAKLKESRGS SRNAISSYIE ERYVAPLNFE RLLAANLKVL TEKGRLIKVK 180 HHYRIAPNRA SSDGKGGPFS LPMGGKLDST MVEKNETRVL TKEQIDADLE QMKSMSAEEA 240 AAAAAQAVAE AEVAIAEAEQ AARIAEEYEA EAEAAQCFAE VASKALQHQT ILVCLMGLSG 300 STARVFIFST VGNLLLICG*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.5724	0.0	fruit\| leaf

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc02g064630.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT014455	0.0	Lycopersicon esculentum clone 133802R, mRNA sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019067738.1	0.0	single myb histone 6 isoform X1
Refseq	XP_019067739.1	0.0	single myb histone 6 isoform X1
Refseq	XP_019067740.1	0.0	single myb histone 6 isoform X1
Refseq	XP_019067742.1	0.0	single myb histone 6 isoform X1
Refseq	XP_025885033.1	0.0	single myb histone 6 isoform X1
Refseq	XP_025885034.1	0.0	single myb histone 6 isoform X1
TrEMBL	A0A0V0IBG0	1e-164	A0A0V0IBG0_SOLCH; Putative telomere repeat-binding factor 1-like
STRING	Solyc02g064630.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5122	22	35
Representative plant	OGRP855	16	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49950.3	5e-63	telomere repeat binding factor 1

Link Out ? help Back to Top
Phytozome	Solyc02g064630.2.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]