PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc02g062950.2.1 | ||||||||
Common Name | LOC544093 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | bZIP | ||||||||
Protein Properties | Length: 342aa MW: 36593.2 Da PI: 5.7316 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 75.2 | 9e-24 | 242 | 304 | 1 | 63 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+elkr++rkq+NRe+ArrsR+RK+ae+eeL+ kv++L++eN+ Lk+el + ++e++kl+se+ Solyc02g062950.2.1 242 ERELKRQKRKQSNRESARRSRLRKQAECEELQHKVETLSNENHGLKEELRKVSEECEKLTSEN 304 89***********************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF07777 | 8.4E-31 | 1 | 92 | IPR012900 | G-box binding protein, multifunctional mosaic region |
Gene3D | G3DSA:1.20.5.170 | 3.3E-19 | 237 | 301 | No hit | No description |
SMART | SM00338 | 1.3E-22 | 242 | 306 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.2E-21 | 242 | 304 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 12.955 | 244 | 307 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 2.81E-12 | 245 | 301 | No hit | No description |
CDD | cd14702 | 5.25E-24 | 247 | 297 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 249 | 264 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010310 | Biological Process | regulation of hydrogen peroxide metabolic process | ||||
GO:0010629 | Biological Process | negative regulation of gene expression | ||||
GO:0090342 | Biological Process | regulation of cell aging | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 342 aa Download sequence Send to blast |
MGAGEESTPA KPSKVTSTQE TQATPSYPDW SSMQAYYGAG ATPPFFPSTV GSPTPHPYMW 60 GAQHPLMPPY GAPVPYPALY PPAGVYAHPN MPMTPNTLQA NPESDSKAPD GKDQNTSKKL 120 KGCSGGKAGE SGKAASGSGN DGGATRSAES GSEGSSDEND ENDNHEFSAD KNRSFDLMLA 180 NGANAQTNPA TGNPVAMPAP NLNIGMDLWN APSGGPGMIK MRSNQSGVSP APGMGREWIQ 240 DERELKRQKR KQSNRESARR SRLRKQAECE ELQHKVETLS NENHGLKEEL RKVSEECEKL 300 TSENNSIKDE LTRLYGPEAV SKLESNANAM RLQSNVEEAK S* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 258 | 264 | RRSRLRK |
2 | 258 | 265 | RRSRLRKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.257 | 0.0 | flower| fruit| leaf| root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Found in both light and dark grown leaves. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter (PubMed:1373374). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional activator in light-regulated expression of LHCB2.4. Probably binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:1373374, ECO:0000269|PubMed:22718771}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00039 | PBM | Transfer from AT4G36730 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc02g062950.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT013873 | 0.0 | Lycopersicon esculentum clone 132853R, mRNA sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001316475.1 | 0.0 | G-box-binding protein | ||||
Refseq | NP_001316476.1 | 0.0 | G-box-binding protein | ||||
Refseq | XP_010317200.1 | 0.0 | G-box-binding protein isoform X1 | ||||
Refseq | XP_019067521.1 | 0.0 | G-box-binding protein isoform X1 | ||||
Swissprot | P42774 | 1e-107 | GBF1_ARATH; G-box-binding factor 1 | ||||
TrEMBL | A0A3Q7EYS3 | 0.0 | A0A3Q7EYS3_SOLLC; Uncharacterized protein | ||||
STRING | Solyc02g062950.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3780 | 24 | 46 | Representative plant | OGRP700 | 17 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36730.1 | 2e-76 | G-box binding factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Solyc02g062950.2.1 |
Entrez Gene | 544093 |