PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc02g062690.2.1
Common NameLOC101266900
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 306aa    MW: 34225.7 Da    PI: 6.7949
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc02g062690.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.82.2e-09149196455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Solyc02g062690.2.1 149 SHSLAERARREKISKKMKYLQDLVPGC----NKVTGKAGMLDEIINYVQSLQ 196
                         8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000839.93E-9143200No hitNo description
SuperFamilySSF474596.54E-17143214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.6E-18145213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.11145195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.2E-7149196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-9151201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MLQMSVLERQ RAVLERIYNH SKQQLSSLVP QQELAHLITG CVQGNFNMFG GGDSNFVNFQ  60
EMARPSFSTI SNSSITTVSP PPEKESDLSS MIAPRENVVS TKKRKAEFIE EEDCEKSPGN  120
DSKENSKTSE VQKPDYIHVR ARRGQATDSH SLAERARREK ISKKMKYLQD LVPGCNKVTG  180
KAGMLDEIIN YVQSLQKQVE FLSMKLATLN PRLDLNTDNI FVKDLPSYMT TTFPPTVAVP  240
TLSEYNMIQH QQAGSTGDVA QMLPQRRDLM SFPDTYLGSS HVTVVQPQQP TFEPDLQSLF  300
SVGFN*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.90030.0flower| fruit
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc02g062690.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004233521.10.0transcription factor HBI1
TrEMBLA0A3Q7FJN50.0A0A3Q7FJN5_SOLLC; Uncharacterized protein
STRINGSolyc02g062690.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40002142
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36540.13e-54BR enhanced expression 2
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]