PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc02g062400.2.1
Common NameLOC101251254
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family SRS
Protein Properties Length: 352aa    MW: 38501.1 Da    PI: 7.7235
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc02g062400.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702222.58.8e-691242743154
              DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrelkskkqsalsstkls 92 
                          g++sCqdCGnqakkdC+h+RCRtCCksrgf+C+thvkstWvpaakrrerqqqlaa++++++ ++ +++++k+kr+ +  ++s+l st+l+
  Solyc02g062400.2.1 124 GGGISCQDCGNQAKKDCQHMRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLAALQQQQQGHNnNNNNHKNKRQREDPSASSLVSTRLP 214
                         5789****************************************************99888776625555566666666777888888888 PP

              DUF702  93 saeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                         s++  + le+ ++P++v+++avf+c+++ss++d+e++laYq+avsigGhvfkGiLydqG e+
  Solyc02g062400.2.1 215 SNT--NGLEVGKFPSKVRTSAVFQCIQMSSIEDDEDQLAYQAAVSIGGHVFKGILYDQGHES 274
                         876..5699999***********************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051429.5E-66126273IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016231.9E-27128170IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016246.4E-24224271IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MANFFSLGGN QEQQHQEISS SQALVPTESN NWFLYRNEHH HHHHNQEIPN TYKGFELWQS  60
GNTPQHQHQH HQQQQQFRHP IYPLQDLYST DVGLGVGPSR SGFDISAGDH EASRSGFVMM  120
RSGGGGISCQ DCGNQAKKDC QHMRCRTCCK SRGFQCQTHV KSTWVPAAKR RERQQQLAAL  180
QQQQQGHNNN NNNHKNKRQR EDPSASSLVS TRLPSNTNGL EVGKFPSKVR TSAVFQCIQM  240
SSIEDDEDQL AYQAAVSIGG HVFKGILYDQ GHESQYNNMV AAGGDTSSGG SAGGVQHHHH  300
NSAAVATATT TSGGDATAAG PSNFLDPSLF PAPLSTFMVA GTQFFPPSRS P*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1194199KNKRQR
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371, PubMed:24142382). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371, PubMed:24142382). Acts synergistically with MYC1 in the transactivation of TPS5 (PubMed:24884371). {ECO:0000269|PubMed:24142382, ECO:0000269|PubMed:24884371}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc02g062400.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001274697.10.0expression of terpenoids 1
SwissprotK4B6C90.0EOT1_SOLLC; Protein EXPRESSION OF TERPENOIDS 1
TrEMBLM1B9B50.0M1B9B5_SOLTU; Uncharacterized protein
STRINGSolyc02g062400.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67824110
Representative plantOGRP18721140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51060.11e-58Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  3. Spyropoulou EA,Haring MA,Schuurink RC
    Expression of Terpenoids 1, a glandular trichome-specific transcription factor from tomato that activates the terpene synthase 5 promoter.
    Plant Mol. Biol., 2014. 84(3): p. 345-57
    [PMID:24142382]
  4. Spyropoulou EA,Haring MA,Schuurink RC
    RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters.
    BMC Genomics, 2014. 15: p. 402
    [PMID:24884371]