PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc02g062380.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GATA
Protein Properties Length: 290aa    MW: 32109.2 Da    PI: 7.0524
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc02g062380.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.59.1e-19213247135
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         Cs+Cg+ kTplWR gp g+ktLCnaCG+++++ +l
  Solyc02g062380.1.1 213 CSHCGVQKTPLWRTGPLGEKTLCNACGVRFKSGRL 247
                         *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169926.3E-7121286IPR016679Transcription factor, GATA, plant
SMARTSM004013.4E-15207257IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.308210243IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.8E-15211245IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.25E-16212262No hitNo description
SuperFamilySSF577162.19E-14212270No hitNo description
PROSITE patternPS003440213238IPR000679Zinc finger, GATA-type
PfamPF003201.8E-16213247IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MKFYPHVVYM VPVCYVFGQV TQQIFKQKMD YSGNCQSFVS GDDLFVDELL DLSNGFSEDE  60
ENENENNNSS SSQQIKECDK ETVIIPSGKQ DFGSLLGCEI SLPGADLDNL EWLSHFVEDS  120
FSEYSLTYSA GNLPGKSLKL HSNVEIPVRE KPCFTAPLGA EREKNKPPSM SFSSSSSTTA  180
NSFWGELSVE NKPAARKPKK KMEKRIGIGA KQCSHCGVQK TPLWRTGPLG EKTLCNACGV  240
RFKSGRLLPE YRPASSPTFS TGLHSNSHRK VLEMRQKKET EPGPPVQSF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.247140.0leaf
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc02g062380.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004233547.10.0GATA transcription factor 5
RefseqXP_010317231.10.0GATA transcription factor 5
SwissprotQ9FH575e-51GATA5_ARATH; GATA transcription factor 5
TrEMBLA0A3Q7EYN40.0A0A3Q7EYN4_SOLLC; GATA transcription factor
STRINGSolyc02g062380.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11542481
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.27e-52GATA transcription factor 5
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]