PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc02g061990.2.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

bZIP

Protein Properties

Length: 179aa MW: 19887.1 Da PI: 10.2632

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc02g061990.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	21.1	6.8e-07	155	177	6	28
HHHCHHHHHHHHHHHHHHHHHHH CS bZIP_1 6 rerrkqkNReAArrsRqRKkaei 28 + +r++kNRe+A r+R+RK+ ++ Solyc02g061990.2.1 155 KNKRMIKNRESAARFRARKLTRM 177 579****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	3.6E-4	155	177	No hit	No description
PROSITE pattern	PS00036	0	157	172	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 179 aa Download sequence Send to blast
MWSSSSEEHH QNHQNLATNS SSSSSSCSYN HPINPILSIT SKTMEEVWKD INLSCSRDAQ 60 NTSGMVLQDL LARPFANDPS TAAVTRAYGS PVPPPPVTML TLNSVPEFHF FSNLNPIRQN 120 QQKHISNDAL ASPAPGRKRH SESDNNNNNN SSELKNKRMI KNRESAARFR ARKLTRMN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc02g061990.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC232622	2e-07	Solanum lycopersicum chromosome 7 clone C07HBa0025K11, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010317247.1	1e-108	bZIP transcription factor 27-like
TrEMBL	A0A3Q7EYH3	1e-127	A0A3Q7EYH3_SOLLC; Uncharacterized protein
STRING	Solyc02g061990.2.1	1e-128	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3572	22	39
Representative plant	OGRP8739	6	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17770.1	4e-09	basic region/leucine zipper motif 27

Link Out ? help Back to Top
Phytozome	Solyc02g061990.2.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]