PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc02g061910.1.1
Common NameLOC104646076
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NAC
Protein Properties Length: 265aa    MW: 29914.8 Da    PI: 6.2889
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc02g061910.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM37.47.6e-122111526128
                 NAM  26 kkleleevikevdiykv.ePwdLpkkvkaeekewyfFskrdkkya.tgkrknr..atksgyWkatgkdkevlskkgelvglkktLvfykgr 112
                          +      i+ vd+y   +P+++  +  a+ +e++ F++ +kk++ +gk+ nr  +   g Wk   ++k+v++ k++++g kkt+ f   +
  Solyc02g061910.1.1  21 VS----VQIQFVDLYGNnKPSQIFDT--ATATEYHVFTRLKKKKTgNGKNFNRgiVGGGGSWKGIDNSKPVYDWKRSVIGSKKTFRFE--E 103
                         33....2378899996548*999633..346789989887666654899****74445899**************************7..2 PP

                 NAM 113 apkgektdWvmheyrl 128
                         +    +  W+m+eyrl
  Solyc02g061910.1.1 104 N----NHVWIMKEYRL 115
                         2....458******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100515.6531141IPR003441NAC domain
PfamPF023652.0E-66115IPR003441NAC domain
SuperFamilySSF1019416.02E-166140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MKINLTDEQL MLSLLKFVTG VSVQIQFVDL YGNNKPSQIF DTATATEYHV FTRLKKKKTG  60
NGKNFNRGIV GGGGSWKGID NSKPVYDWKR SVIGSKKTFR FEENNHVWIM KEYRLCDKAQ  120
NALIESGRIQ EEFVVCRITR SVNSSSSNFV PISSSQPQQT VKSFSPDLGQ ISAAANVIPN  180
GNITQVSLVT EESKLRQGSV HQETPPDYDI TTYYKQLDAY AVSVLETMVP YIPEPLQEDE  240
VDSIPLFSED FYIGYTDLWL KNWQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc02g061910.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2467430.0Solanum lycopersicum strain Heinz 1706 chromosome 2 clone hba-11o22 map 2, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015158228.18e-91PREDICTED: uncharacterized protein LOC107057785
TrEMBLA0A3Q7F0820.0A0A3Q7F082_SOLLC; Uncharacterized protein
STRINGSolyc02g061910.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33811041
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]