PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc02g061870.1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | NAC | ||||||||
Protein Properties | Length: 220aa MW: 25210.6 Da PI: 7.0733 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 41.5 | 4.2e-13 | 6 | 114 | 10 | 128 |
NAM 10 tdeelvveyLkkkvegkkleleevikevdiykv.ePwdLpkkvkaeekewyfFskrdkkyatgkrknr..atksgyWkatgkdkevlskkg 97 +de+l+ yL + v+g ++ + + i+ v++y +P++L + +++++ yfF++ +k+ gk nr a + g W++ g+++ev++k++ Solyc02g061870.1.1 6 NDEQLI-GYLINFVTGVPVGC-NEIRIVELYGNkKPSQLFDT--TTTDHHYFFTELKKR---GKYFNRgiAGRGGSWRKYGTNEEVVDKNR 89 699999.9**********999.6699999886549****633..234577999888764...6677776466799**************** PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 +++g k+ + f + e+ W+m+ey l Solyc02g061870.1.1 90 SVIGFKRRFRFE--E----ENHIWIMKEYCL 114 ***********7..2....3458******86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 14.267 | 1 | 141 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.4E-8 | 6 | 114 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 4.84E-15 | 7 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MGTNINDEQL IGYLINFVTG VPVGCNEIRI VELYGNKKPS QLFDTTTTDH HYFFTELKKR 60 GKYFNRGIAG RGGSWRKYGT NEEVVDKNRS VIGFKRRFRF EEENHIWIMK EYCLFDSKLK 120 DLRLRGQIRH EGFVVCSIMR KGTCSSQCQV NQDLGLIQCD DLKESTMTAA KDDECSVRQE 180 VVHTRPLLDS MDGNIPGQVG LGSNEHQETP YSVTFYEFL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc02g061870.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC246743 | 0.0 | Solanum lycopersicum strain Heinz 1706 chromosome 2 clone hba-11o22 map 2, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004233985.1 | 1e-124 | NAC domain-containing protein 96-like | ||||
TrEMBL | A0A3Q7EYE9 | 1e-163 | A0A3Q7EYE9_SOLLC; Uncharacterized protein | ||||
STRING | Solyc02g061870.1.1 | 1e-164 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3381 | 10 | 41 |
Link Out ? help Back to Top | |
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Phytozome | Solyc02g061870.1.1 |
Publications ? help Back to Top | |||
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