PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc02g061780.2.1 | ||||||||
Common Name | LOC101257530 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | NAC | ||||||||
Protein Properties | Length: 245aa MW: 28226 Da PI: 7.6566 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 146.3 | 1.6e-45 | 9 | 135 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 pGfrFhPt+eel+++yLk+ ++++k++ ++i ++iy ++Pw+Lp +++ +e+ewyfF++ ++k+ + r+nr+t++g+Wkatg+d+++ Solyc02g061780.2.1 9 PGFRFHPTEEELINFYLKRIINDDKIDS-NTIGFLNIYLYDPWELPGMARIGEREWYFFVPINRKHGPKGRPNRTTRNGFWKATGSDRQIR 98 9**************************9.88***************8888999************************************** PP NAM 94 sk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 s+ ++++glkktLvfy grapkg++tdWvm+eyrl Solyc02g061780.2.1 99 SSiePKRVIGLKKTLVFYGGRAPKGTRTDWVMNEYRL 135 99888889***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 52.203 | 7 | 152 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.01E-53 | 8 | 152 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.7E-25 | 9 | 135 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MSLAELELPG FRFHPTEEEL INFYLKRIIN DDKIDSNTIG FLNIYLYDPW ELPGMARIGE 60 REWYFFVPIN RKHGPKGRPN RTTRNGFWKA TGSDRQIRSS IEPKRVIGLK KTLVFYGGRA 120 PKGTRTDWVM NEYRLPHGHK DHDIVLCKVY RKATSFKVLE ERAMIEEDEA KKTYLASAPH 180 DESQDMLASL NSSSSKNDMY FKSCEEKNDE LLGSNAFVEP SKFSIDSLSS PLWSTGQDLW 240 TLFS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 1e-42 | 3 | 155 | 15 | 171 | NAC domain-containing protein 19 |
3swm_B | 1e-42 | 3 | 155 | 15 | 171 | NAC domain-containing protein 19 |
3swm_C | 1e-42 | 3 | 155 | 15 | 171 | NAC domain-containing protein 19 |
3swm_D | 1e-42 | 3 | 155 | 15 | 171 | NAC domain-containing protein 19 |
3swp_A | 1e-42 | 3 | 155 | 15 | 171 | NAC domain-containing protein 19 |
3swp_B | 1e-42 | 3 | 155 | 15 | 171 | NAC domain-containing protein 19 |
3swp_C | 1e-42 | 3 | 155 | 15 | 171 | NAC domain-containing protein 19 |
3swp_D | 1e-42 | 3 | 155 | 15 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269|PubMed:26834774}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc02g061780.2.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269|PubMed:26834774}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010317253.1 | 0.0 | NAC domain-containing protein 22-like | ||||
Swissprot | Q10S65 | 9e-81 | NAC22_ORYSJ; NAC domain-containing protein 22 | ||||
TrEMBL | A0A3Q7F060 | 0.0 | A0A3Q7F060_SOLLC; Uncharacterized protein | ||||
STRING | Solyc02g061780.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3531 | 22 | 48 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G17040.1 | 2e-80 | NAC domain containing protein 36 |
Link Out ? help Back to Top | |
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Phytozome | Solyc02g061780.2.1 |
Entrez Gene | 101257530 |
Publications ? help Back to Top | |||
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