PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc02g031820.1.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

ARR-B

Protein Properties

Length: 355aa MW: 41037.8 Da PI: 5.5041

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc02g031820.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	34.8	3.5e-11	221	271	3	55
G2-like 3 rlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 ++Wt eL ++ e+v++LG +kA Pk++le m v++Lt e + L kYR+ Solyc02g031820.1.1 221 NMKWTAELEKKLDEVVHELG--DKAGPKNVLERMCVQDLTKECLTYRLKKYRS 271 69***************4..89**************************7 PP
2	Response_reg	35.2	6.4e-13	20	97	1	77
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEE CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivv 77 +l++d +p+ +++++ ++e++ + +v++ ++++ al +l+++ +Dli++D +m +md le++k+i+ ++k+ i+++ Solyc02g031820.1.1 20 ILLIDPDPTSLSNIAAIVEEHSF-KVTAIEQATVALSILRKHInqFDLIMVDANMLEMDYLEFVKSIQLIKEKTIIWIC 97 89*******************.***********998778************************99999987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.40.50.2300	5.8E-12	17	96	No hit	No description
SuperFamily	SSF52172	1.05E-10	17	87	IPR011006	CheY-like superfamily
PROSITE profile	PS50110	15.374	19	189	IPR001789	Signal transduction response regulator, receiver domain
Pfam	PF00072	1.7E-7	20	97	IPR001789	Signal transduction response regulator, receiver domain
CDD	cd00156	1.15E-6	21	86	No hit	No description
Gene3D	G3DSA:1.10.10.60	7.7E-11	217	275	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000160	Biological Process	phosphorelay signal transduction system
GO:0005622	Cellular Component	intracellular
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence Send to blast
MDCEIICNVD VPLAYVGLRI LLIDPDPTSL SNIAAIVEEH SFKVTAIEQA TVALSILRKH 60 INQFDLIMVD ANMLEMDYLE FVKSIQLIKE KTIIWICFIY ENSLISSLKL KDIWKHVRWH 120 DKKANEESQH YNAKQVNLMD NISCPTKMQD LKGKSKENCS TTYLDQEIDS LMEKDAAKRS 180 KRMRSTNEET QVKHSVSSEK EEEHSFLPKI STERPEKERR NMKWTAELEK KLDEVVHELG 240 DKAGPKNVLE RMCVQDLTKE CLTYRLKKYR SQKQQVSNVQ PVTSTIFNEE HPSKVFNSSN 300 SSTDVNELFQ GAYRPQPLEV PLVTLPSSNH SSLIECDEWI NEFLELDDFE PKLR*

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence Send to blast

MDCEIICNVD VPLAYVGLRI LLIDPDPTSL SNIAAIVEEH SFKVTAIEQA TVALSILRKH  60
INQFDLIMVD ANMLEMDYLE FVKSIQLIKE KTIIWICFIY ENSLISSLKL KDIWKHVRWH  120
DKKANEESQH YNAKQVNLMD NISCPTKMQD LKGKSKENCS TTYLDQEIDS LMEKDAAKRS  180
KRMRSTNEET QVKHSVSSEK EEEHSFLPKI STERPEKERR NMKWTAELEK KLDEVVHELG  240
DKAGPKNVLE RMCVQDLTKE CLTYRLKKYR SQKQQVSNVQ PVTSTIFNEE HPSKVFNSSN  300
SSTDVNELFQ GAYRPQPLEV PLVTLPSSNH SSLIECDEWI NEFLELDDFE PKLR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc02g031820.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC220059	0.0	Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015164912.1	0.0	PREDICTED: two-component response regulator ORR22-like
TrEMBL	K4B5C9	0.0	K4B5C9_SOLLC; Uncharacterized protein
STRING	Solyc02g031820.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4899	7	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16110.1	8e-16	response regulator 2

Link Out ? help Back to Top
Phytozome	Solyc02g031820.1.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]