PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc02g024070.2.1 | ||||||||
Common Name | LOC101268331 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 852aa MW: 93078.9 Da PI: 5.4925 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 53.9 | 3.1e-17 | 22 | 80 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le++++++++p+ +r++L ++ +++ +q+kvWFqNrR +ek+ Solyc02g024070.2.1 22 KYVRYTPEQVEALERVYAECPKPTSLRRQQLIRESpilsNIEPKQIKVWFQNRRCREKQ 80 5679******************************9999*******************97 PP | |||||||
2 | START | 167.7 | 8e-53 | 170 | 377 | 2 | 204 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..ga 90 +aee+++e++ ka+ ++ Wv++ +++g++++ +++ s+++sg a+ra+g+v +++ v+e+l+d + W ++++ +l vi +g g+ Solyc02g024070.2.1 170 IAEETLAEFLGKATGTAVDWVQLIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPT-KVAEILKDCPSWYRDCRCLNVLSVIPTGngGT 259 68999*****************************************************.9999999999********************** PP EEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX CS START 91 lqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlp 177 ++l++ +++a+++l+ Rdf+++Ry+ +l++g++vi+++S++ + p+ s+vRae+lpSg+li+p+++g+s +++v+h+dl+++++ Solyc02g024070.2.1 260 IELIYLQTYAPTTLATaRDFWTLRYTTSLEDGSLVICERSLTTATGGPTgppATSFVRAEMLPSGYLIRPCEGGGSMIHIVDHIDLDAWSV 350 ********************************************999998999************************************** PP HHHHHHHHHHHHHHHHHHHHHHTXXXX CS START 178 hwllrslvksglaegaktwvatlqrqc 204 +++lr+l++s+ + ++kt++a+l++ + Solyc02g024070.2.1 351 PEVLRPLYESSKILAQKTTMAALRHIR 377 ***********************9865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-18 | 9 | 80 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.532 | 17 | 81 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.2E-14 | 19 | 85 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.24E-15 | 21 | 84 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 6.83E-16 | 22 | 82 | No hit | No description |
Pfam | PF00046 | 9.1E-15 | 23 | 80 | IPR001356 | Homeobox domain |
CDD | cd14686 | 2.39E-6 | 74 | 113 | No hit | No description |
PROSITE profile | PS50848 | 25.731 | 160 | 388 | IPR002913 | START domain |
CDD | cd08875 | 3.71E-70 | 164 | 380 | No hit | No description |
Gene3D | G3DSA:3.30.530.20 | 1.0E-22 | 168 | 374 | IPR023393 | START-like domain |
SMART | SM00234 | 5.0E-50 | 169 | 379 | IPR002913 | START domain |
SuperFamily | SSF55961 | 6.04E-37 | 170 | 381 | No hit | No description |
Pfam | PF01852 | 2.2E-50 | 170 | 377 | IPR002913 | START domain |
Pfam | PF08670 | 7.9E-47 | 706 | 850 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009855 | Biological Process | determination of bilateral symmetry | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0010072 | Biological Process | primary shoot apical meristem specification | ||||
GO:0080060 | Biological Process | integument development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 852 aa Download sequence Send to blast |
MALCLQRGEG ESGSKNDMDN GKYVRYTPEQ VEALERVYAE CPKPTSLRRQ QLIRESPILS 60 NIEPKQIKVW FQNRRCREKQ RKEASRLQTV NRKLSAMNKL LMEENDRLQK QVSQLVYENG 120 YMKQQINTVS STTTDTSCES VVVSGQQQRK NPTPQHPERD ANNPAGLLAI AEETLAEFLG 180 KATGTAVDWV QLIGMKPGPD SIGIVAVSRN CSGVAARACG LVSLEPTKVA EILKDCPSWY 240 RDCRCLNVLS VIPTGNGGTI ELIYLQTYAP TTLATARDFW TLRYTTSLED GSLVICERSL 300 TTATGGPTGP PATSFVRAEM LPSGYLIRPC EGGGSMIHIV DHIDLDAWSV PEVLRPLYES 360 SKILAQKTTM AALRHIRQIA QETSGEIQYS GGRQPAVLRA LSQRLCRGFN DAVNGFVDDG 420 WTITDSDGVE DVTIAINSSS SKFLGSQYNT LSILPTFGGV LCARASMLLQ NVPPALLVRF 480 LREHRSEWAD YGVDAYSSAS LKASPYAVPC ARPGGFPSSQ VILPLAQTVE HEEFLEVVRL 540 EGPAFSPEDI ALSRDMYLLQ LCSGVDENAA GACAQLVFAP IDESFGDDAP LLPSGFRVIP 600 LEPKSDVPAA TRTLDLASTL EAGTGGSGTR PAGEIEAGNY NHRSVLTISF QFTFESHYQD 660 NVAAMARQYV RSIVGSVQRV AMAIAPSRLS SQLTPKSFPV SPEAVTLARW ISRSYRVNTG 720 GDLFQVDSQA GDAVLKQLWH HSDAIMCCSV KMNASAVFTF ANQAGLDMLE TTLLALQDIM 780 LDKILDEAGR KVLLSEFSKI MQQGFAYLPA GICVSSMGRP ISYEQAIAWK VLNDDDSNHC 840 LAFMFINWSF V* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.17470 | 0.0 | flower| leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc02g024070.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010315636.1 | 0.0 | homeobox-leucine zipper protein ATHB-14-like | ||||
Swissprot | Q6AST1 | 0.0 | HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32 | ||||
TrEMBL | A0A3Q7EW76 | 0.0 | A0A3Q7EW76_SOLLC; Uncharacterized protein | ||||
STRING | Solyc02g024070.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA457 | 24 | 140 | Representative plant | OGRP651 | 16 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34710.1 | 0.0 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc02g024070.2.1 |
Entrez Gene | 101268331 |
Publications ? help Back to Top | |||
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