PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc02g021680.2.1
Common NameLOC101247380
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family WRKY
Protein Properties Length: 382aa    MW: 42634.9 Da    PI: 5.2897
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc02g021680.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.15.7e-31175233259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+
  Solyc02g021680.2.1 175 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 233
                         699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081132.787169235IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.9E-31171235IPR003657WRKY domain
SuperFamilySSF1182902.75E-26173235IPR003657WRKY domain
SMARTSM007741.4E-37174234IPR003657WRKY domain
PfamPF031067.5E-26176233IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MENNNYQGDL ADIFRGGNNN TTSGESSSTN NTIIPIPDGW TQLPYSATEE PTCVQDFGDP  60
FCNLRDPLFH DLDMLQATPT EDNNNNSVFG DSRKRGNNMF SRMLQISPTN KLAMSVQNHD  120
AMNSSKTCSI QNSALQISSP RNTGIKRRKS QAKKVVCIPA AAPANSRQGG EVVPSDLWAW  180
RKYGQKPIKG SPYPRGYYRC SSSKGCSARK QVERSRTDPN MLVITYTSEH NHPWPTQRNA  240
LAGSTRSQPN NSKHTIIPNN PQSQTDTDDQ QKDNAVSISK VKEEVAEEEA VHNHKLVEMR  300
DDEEFSKDSY QPIMLPDSSN QCHEDFFADL VELEADPLNL LFAKTLSGDI NDSRPKEDIE  360
SFNMYDWSKD GNTSNNKTDT L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B9e-26149236280Disease resistance protein RRS1
5w3x_D9e-26149236280Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc02g021680.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010315625.10.0probable WRKY transcription factor 14
SwissprotO647472e-83WRK35_ARATH; Probable WRKY transcription factor 35
TrEMBLA0A3Q7EWG20.0A0A3Q7EWG2_SOLLC; Uncharacterized protein
STRINGSolyc02g021680.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67012433
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.13e-80WRKY DNA-binding protein 35
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]