PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc02g021260.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 1318aa    MW: 147503 Da    PI: 10.4562
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc02g021260.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3581.8e-18189272494
                         E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                  B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                          + ps+v++s +l++p kfa+++ +++++   l+l+ +   sW+vk++   + g+   ++GWk Fv++n+Lk+gD++vF++ +   ++l+v
  Solyc02g021260.1.1 189 FMQPSYVSASFNLSIPLKFARKYFLENNG--NLVLRVPGIGSWSVKCTLGMTNGK--VGSGWKAFVQDNKLKVGDVCVFEVLK---GQLFV 272
                         6889*******************887656..6***************77555555..79*********************544...34444 PP
2B357.81.9e-18405488494
                         E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                  B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                          + ps+v++s +l++p kfa+++ +++++   l+l+ +   sW+vk++   + g+   ++GWk Fv++n+Lk+gD++vF++ +   ++l+v
  Solyc02g021260.1.1 405 FMQPSYVSASFNLSIPLKFARKYFLENNG--NLVLRVPGIGSWSVKCTLGMTNGK--VGSGWKAFVQDNKLKVGDVCVFEVLK---GQLFV 488
                         5789*******************887656..6***************77555555..79*********************544...34444 PP
3B357.23e-18621704494
                         E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                  B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                          + ps+v++s +l++p kfa+++ +++++   l+l+ +   sW+vk++   + g+   ++GWk Fv++n+Lk+gD++vF++ +   ++l+v
  Solyc02g021260.1.1 621 FMQPSYVSASFNLSIPLKFARKYFLENNG--NLVLRVPGIGSWSVKCTLGMTNGK--VGSGWKAFVQDNKLKVGDICVFEVLK---GQLFV 704
                         5789*******************887656..6***************77555555..79*********************543...44455 PP
4B333.86.2e-1110231113599
                          -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE.. CS
                  B3    5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefel 92  
                          + ps+v++  +l +  ++a+++  + +++ +l+l+     sW+vk+      gr+ l   W+ Fv +n+Lk+gD++vF+l++  + f l
  Solyc02g021260.1.1 1023 MQPSYVSRPYNLHMTFSYAQKYLWE-KCG-DLVLRAAGRGSWSVKYDLGLPEGRIRL--SWRAFVLDNKLKSGDVCVFELIKGtQPF-L 1106
                          5677888888888888888888433.244.8***************66555555555..5********************9764665.7 PP

                          EEEEE-S CS
                  B3   93 vvkvfrk 99  
                           v +fr+
  Solyc02g021260.1.1 1107 DVIIFRA 1113
                          7777775 PP
5B349.57.5e-1612211309695
                          ..-HHHHT...T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                  B3    6 tpsdvlks...grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91  
                           ps+v+      +l++  + a+++ +   ++ +++le +s r+W+vk+  + + ++  ++ GWkeFv +n+Lk+gD+++F+ +gr +  
  Solyc02g021260.1.1 1221 QPSYVSLArgpIQLSIASSVARKFFST--RQSDVVLEVSSKRRWTVKC--SVGIKTAKFSCGWKEFVVDNKLKVGDVCIFEWTGRPNLV 1305
                          334443335555789999999999755..4449***************..677777789**********************88876665 PP

                          .EEE CS
                  B3   92 lvvk 95  
                          ++v 
  Solyc02g021260.1.1 1306 FNVI 1309
                          5555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.9E-23178280IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-20179279IPR015300DNA-binding pseudobarrel domain
CDDcd100178.61E-19184278No hitNo description
SMARTSM010198.1E-18186280IPR003340B3 DNA binding domain
PROSITE profilePS5086313.592186280IPR003340B3 DNA binding domain
PfamPF023624.3E-16188272IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.2E-22394496IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.02E-19395495IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.2E-17402496IPR003340B3 DNA binding domain
PROSITE profilePS5086313.535402496IPR003340B3 DNA binding domain
PfamPF023624.5E-16404488IPR003340B3 DNA binding domain
CDDcd100173.31E-18406494No hitNo description
Gene3DG3DSA:2.40.330.102.5E-22610710IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.08E-20611710IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.31618712IPR003340B3 DNA binding domain
SMARTSM010196.1E-17618712IPR003340B3 DNA binding domain
PfamPF023625.8E-16620704IPR003340B3 DNA binding domain
CDDcd100173.78E-18622710No hitNo description
Gene3DG3DSA:2.40.330.101.3E-6830888IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-5831888IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.83838929IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.4E-1610111114IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.67E-1510141115IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.001510181114IPR003340B3 DNA binding domain
PROSITE profilePS5086310.81410191114IPR003340B3 DNA binding domain
PfamPF023626.4E-810231113IPR003340B3 DNA binding domain
CDDcd100171.46E-1110231112No hitNo description
Gene3DG3DSA:2.40.330.101.2E-2212081311IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.92E-1812091312IPR015300DNA-binding pseudobarrel domain
CDDcd100172.76E-1612141312No hitNo description
SMARTSM010191.5E-612161314IPR003340B3 DNA binding domain
PROSITE profilePS5086311.68812191314IPR003340B3 DNA binding domain
PfamPF023622.1E-1312321307IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1318 aa     Download sequence    Send to blast
MASSSSTKNN TVVQSRFIKI ILFPHECIHL SIPHDFERRC CNDILSPVHL EVPTGQVWEV  60
ELRHSEAEIE YPYSSRTFHF HETHHAPIID LSESDVDIME DTPRRQKLKE KVVDHSLENL  120
CYGQISKRKR HGDDVASPSF TKKVQNCRIH KKDSKSVYDQ NKTVMEKESS TAYQQAKAFK  180
SKNPFIISFM QPSYVSASFN LSIPLKFARK YFLENNGNLV LRVPGIGSWS VKCTLGMTNG  240
KVGSGWKAFV QDNKLKVGDV CVFEVLKGQL FVDVIIFRAA GSTLMHNIVA EVPRVPCSQP  300
KVVQTKKSKQ HTGGSYGLNL KIKEEQGEGT EILGHCPSGR GSKRKQPEVD AVVPSFTKKA  360
QNCRIHKKDS KSVYDQNKTV MEKESSTAYQ QAKAFKYKNP FTISFMQPSY VSASFNLSIP  420
LKFARKYFLE NNGNLVLRVP GIGSWSVKCT LGMTNGKVGS GWKAFVQDNK LKVGDVCVFE  480
VLKGQLFVDV IIFRAAGSTL MHNIVAEVSR VPYSQPKVVQ TKKSKQHTGG SYGLNLKIKV  540
EQGEGTEILG HCPSGRGSKR KQSEVDAVVP SFTKKAQNCR IHKKDSKSVY DQNKTVMEKE  600
SSTAYQQAKA FKSKNPFTIS FMQPSYVSAS FNLSIPLKFA RKYFLENNGN LVLRVPGIGS  660
WSVKCTLGMT NGKVGSGWKA FVQDNKLKVG DICVFEVLKG QLFVDVIIFR VAGSTLMHNI  720
VAEVPRVPCS QPKVVQTKKS KQHTGGSYGL NLKIKEEQGE GTEILGHCPS GRGSKRKQPE  780
VDAVVSSFTR KTKKSGGSCG LHKKQSKIVY DKNKTVTDKK SSIAYQRAKA FKSKNPFIVS  840
FMQPSYISKH YILKIWSAFA RKYFLENDGN LVLRVSGSGS WSVKCTITTA MIKGGQLFVD  900
VTIFRAAGSI IVAEVPGRSD RKSKVIKEEH GKGTEIEHSV KVLGHCPLGN DSKRRRPARK  960
AEDVASPSFT RKPKKSGESC RMHKQQTKMV NAKRKTVLDK EMTIAYQRAK AFRSKNPFVI  1020
YFMQPSYVSR PYNLHMTFSY AQKYLWEKCG DLVLRAAGRG SWSVKYDLGL PEGRIRLSWR  1080
AFVLDNKLKS GDVCVFELIK GTQPFLDVII FRANERKPKH TTDGGVSGFR NKIIKTENSV  1140
PCPRTKIDHS RKHNLEKKHK GDSDGFITSK VKEELREGTL RHGQQSTSFC MGTVVAKEMV  1200
LAYQKAKAFT SENPFFLSFM QPSYVSLARG PIQLSIASSV ARKFFSTRQS DVVLEVSSKR  1260
RWTVKCSVGI KTAKFSCGWK EFVVDNKLKV GDVCIFEWTG RPNLVFNVII FPSCGGI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A8e-15587131118144B3 domain-containing transcription factor VRN1
4i1k_B8e-15587131118144B3 domain-containing transcription factor VRN1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1775793RKQPEVDAVVSSFTRKTKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc02g021260.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010315608.10.0uncharacterized protein LOC101244431 isoform X1
TrEMBLA0A3Q7EVR00.0A0A3Q7EVR0_SOLLC; Uncharacterized protein
STRINGSolyc02g021260.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7591893
Representative plantOGRP1718538
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.17e-19B3 family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]