PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc01g112320.2.1
Common NameLOC101260088
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family FAR1
Protein Properties Length: 782aa    MW: 89510 Da    PI: 6.1949
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc01g112320.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR199.63.2e-3174165291
                FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                         fYn+YA++vGFs+r+s+s++s+++g i++r fvC keg+r+ ++k+  +++ +r+r++tr+gCka l vk +++g w+v+++++eHnHel+
  Solyc01g112320.2.1  74 FYNSYARRVGFSTRVSSSRRSRKDGAIIQRSFVCAKEGFRNLNEKRtkDREIKRPRTVTRVGCKAALSVKIQDSGMWVVSNFVKEHNHELV 164
                         9***************************************998888545677889***********************************8 PP

                FAR1  91 p 91 
                         p
  Solyc01g112320.2.1 165 P 165
                         6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.8E-2974165IPR004330FAR1 DNA binding domain
PfamPF105514.7E-32286378IPR018289MULE transposase domain
PfamPF044345.4E-12554600IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096611.263566602IPR007527Zinc finger, SWIM-type
SMARTSM005751.2E-9577604IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 782 aa     Download sequence    Send to blast
MDNEVIEFDI GLGGGGGSED GDGDDVLDEG NVANCSLVID GNVATVRSYS PQGDLDLEPY  60
EGMEFESEEA AKAFYNSYAR RVGFSTRVSS SRRSRKDGAI IQRSFVCAKE GFRNLNEKRT  120
KDREIKRPRT VTRVGCKAAL SVKIQDSGMW VVSNFVKEHN HELVPPDQVH CLRSHRQISG  180
PAKTLIDTLQ AAGMGPRRIM SALIKEYGGI SKVGFTEVDC RNYMRNNRQR SMEGDIQLLL  240
DYLKQMNIQN AGFFYAVQGD EDQCSGNVFW ADSKARANYN YFGDTITFDT TYRSNRYRLP  300
FAPFTGVNHH GQPVLFGCAF LINESEASFI WLFKTWLAAM SGQPPLSMTT DHDAVIRSAI  360
MQVFPETRHR FCKWHIFKKC QEKLSHVFLE HPNFEADFHK CVNLTESTEE FESCWLSLVD  420
KYELRDHDWL QVIYLDRTQW VQVYLRDAFF AEMSITQRSD SMNSYFDGYV NASTNLNQFF  480
KLYEKAVESR TEKEVKADYD TMSTFPVLKT PSPMEKQASE VYTKKLFMRF QEELVATLTF  540
MANKVEDDGL VTTYQVAKFG DDHSAYYVRF NVLEMKATCS CQMFEFSGLL CRHVLAVFRV  600
TNVLTLPSHY ILKRWSRSAK SSVALEDRVA DVINYYLESH TVRYNMLRHE AFKFVEEGAE  660
TVDSYTVAMA ALEEASKKIF LAVKHDGRIS IVNGHCRENL TRNGVHANYN SEDEQRSLAC  720
PLSEDDMDTK IQELSYQLDC ATQKCEVYRA NLYSVLKDID DHKQQLSINV QRIKHSLKDD  780
L*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.96440.0flower
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc01g112320.2.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2395700.0Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-119i16 map 1, complete sequence
GenBankAC2402170.0Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-9a8 map 1, complete sequence
GenBankAC2466960.0Solanum lycopersicum strain Heinz 1706 chromosome 1 clone slm-58a15 map 1, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004231108.10.0protein FAR1-RELATED SEQUENCE 5
SwissprotQ9SZL80.0FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A3Q7EV480.0A0A3Q7EV48_SOLLC; Uncharacterized protein
STRINGSolyc01g112320.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43522109
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.10.0FAR1-related sequence 5
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]