PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc01g110480.2.1

Common Name

LOC101250636

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

bZIP

Protein Properties

Length: 583aa MW: 63703.5 Da PI: 7.3965

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc01g110480.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	34.6	4.1e-11	421	479	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r NR +A rs +RK +i+eLe kv++L++e ++L +l l+ + l+s++ Solyc01g110480.2.1 421 KRAKRILANRQSAARSKERKMRYIAELEHKVQTLQTEATTLSAQLTLLQRDATGLTSQN 479 9************************************************9999999887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	4.4E-18	417	481	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.898	419	482	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.1E-9	421	479	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.0E-11	421	478	No hit	No description
SuperFamily	SSF57959	5.42E-11	421	472	No hit	No description
CDD	cd14703	6.40E-24	422	471	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005829	Cellular Component	cytosol
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 583 aa Download sequence Send to blast
MAGDNDEGHS DMVQRLQSSF GTSSSSLPKQ LQPISMNQLD IPQLTTSQFR GQMRQFSPNF 60 GVENSKRVGI PPSHPQMPPI SPYSQIPVTR PGNQQMGMQN FTSAGPSHSR SLSQPAFFSL 120 DSLPPLSPSP YRESPSTSMS DPISADVSMG DQDGNSHSLL PPTPFSRCNS SRAGESLPPR 180 KAHRRSNSDI PFGFSGIMQS SPPLVPLRSP GALERSVPSR DNLGGKPVQL VKRESMWERG 240 NDNNNVEGMG ERKSEGEVVD DLFSAYMNLD NIDAFNSSGT DEKLGIENRE DLDSRASGTK 300 TNGGDSSDNE ATSSVNDSSS GSMQKREGVK RSAVGDIAPT TRHYRSVSMD SFMGKLNFID 360 DSPKLPPSPG PRPGQLSPTN SLDGNSNSFS LEFGNGEFSG AELKKIMANE KLAEIALADP 420 KRAKRILANR QSAARSKERK MRYIAELEHK VQTLQTEATT LSAQLTLLQR DATGLTSQNS 480 ELKFRLQAME QQAQLRDALN EALTAEVQRL KIATAELSAD ASKFQQLSLN PQMFQSQQQQ 540 SNQLNMHQLQ QQQQQQQSSQ PQQHAQARQQ LNSSTTSKHE SK*

Sequence ? help Back to Top

Protein Sequence Length: 583 aa Download sequence Send to blast

MAGDNDEGHS DMVQRLQSSF GTSSSSLPKQ LQPISMNQLD IPQLTTSQFR GQMRQFSPNF  60
GVENSKRVGI PPSHPQMPPI SPYSQIPVTR PGNQQMGMQN FTSAGPSHSR SLSQPAFFSL  120
DSLPPLSPSP YRESPSTSMS DPISADVSMG DQDGNSHSLL PPTPFSRCNS SRAGESLPPR  180
KAHRRSNSDI PFGFSGIMQS SPPLVPLRSP GALERSVPSR DNLGGKPVQL VKRESMWERG  240
NDNNNVEGMG ERKSEGEVVD DLFSAYMNLD NIDAFNSSGT DEKLGIENRE DLDSRASGTK  300
TNGGDSSDNE ATSSVNDSSS GSMQKREGVK RSAVGDIAPT TRHYRSVSMD SFMGKLNFID  360
DSPKLPPSPG PRPGQLSPTN SLDGNSNSFS LEFGNGEFSG AELKKIMANE KLAEIALADP  420
KRAKRILANR QSAARSKERK MRYIAELEHK VQTLQTEATT LSAQLTLLQR DATGLTSQNS  480
ELKFRLQAME QQAQLRDALN EALTAEVQRL KIATAELSAD ASKFQQLSLN PQMFQSQQQQ  540
SNQLNMHQLQ QQQQQQQSSQ PQQHAQARQQ LNSSTTSKHE SK*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.4296	0.0	callus\| cell culture\| flower\| fruit\| leaf\| seed\| stem

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc01g110480.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT014576	0.0	Lycopersicon esculentum clone 134031F, mRNA sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004230901.1	0.0	probable transcription factor PosF21
Refseq	XP_015062011.1	0.0	probable transcription factor PosF21
TrEMBL	A0A3Q7ETM7	0.0	A0A3Q7ETM7_SOLLC; Uncharacterized protein
STRING	Solyc01g110480.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1265	24	78
Representative plant	OGRP126	17	181

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38900.3	1e-138	bZIP family protein

Link Out ? help Back to Top
Phytozome	Solyc01g110480.2.1
Entrez Gene	101250636

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]