PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc01g110470.2.1
Common NameLOC101259787
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family BBR-BPC
Protein Properties Length: 314aa    MW: 35546.2 Da    PI: 9.8684
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc01g110470.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind306.87.7e-9413131301
           GAGA_bind   1 mdddgsre..rnkgyye................paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernka 73 
                         mdd g+re  r++  y                 +++++   +++++  + aerda+++ern a++ekk+a+aerd a +qrd+a+aer+ a
  Solyc01g110470.2.1   1 MDDGGQREnrRHRMDYSkgcyapwnvvppyqmkDQEAFI--MNTKIRMVFAERDAAVEERNRAVIEKKEAYAERDFAIQQRDTAFAERDTA 89 
                         899999888777775555999999999655443223444..7888988999**************************************** PP

           GAGA_bind  74 lverdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekka 164
                         + erdn+++al + e +++ +l       +gtk  ++ +++++ +++  ++  r+    +a+pi+   +ea ++ ++k+++ +k   +k a
  Solyc01g110470.2.1  90 IKERDNAIAALHFLESTTNGSL---GCRTRGTKRPEQPKNHRNYNTDSVCI-NRDVPVADAFPISAISSEAAKALQVKRSKVNKGMSTKSA 176
                         *************998754433...33467888888666644445444444.589999999999999999998888885554444444444 PP

           GAGA_bind 165 kkkkkksekskkkvkkesaderskaekksidl.vlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaR 254
                         k+++k ++k +++ +++ +++ skae++  dl +++++++Dest+P+PvC+CtG++rqCYkWG+GGWqS+CCtt +S yPLP+ +++r+aR
  Solyc01g110470.2.1 177 KSPRK-TKKVNEDLNRHLSKDGSKAEWDAHDLgSIDQIQFDESTMPIPVCTCTGIPRQCYKWGSGGWQSSCCTTYLSEYPLPQLPNKRHAR 266
                         44444.6666777777777788**********88********************************************************* PP

           GAGA_bind 255 iagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                         ++grKmS+++f++lL + a    dls p+DLk++WAkHGtn+++ti+
  Solyc01g110470.2.1 267 LGGRKMSGSVFSRLLTRFAVADRDLSMPIDLKTYWAKHGTNRYITIK 313
                         **********************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062173.7E-921313IPR010409GAGA-binding transcriptional activator
SMARTSM012269.7E-1131313IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0050793Biological Processregulation of developmental process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MDDGGQRENR RHRMDYSKGC YAPWNVVPPY QMKDQEAFIM NTKIRMVFAE RDAAVEERNR  60
AVIEKKEAYA ERDFAIQQRD TAFAERDTAI KERDNAIAAL HFLESTTNGS LGCRTRGTKR  120
PEQPKNHRNY NTDSVCINRD VPVADAFPIS AISSEAAKAL QVKRSKVNKG MSTKSAKSPR  180
KTKKVNEDLN RHLSKDGSKA EWDAHDLGSI DQIQFDESTM PIPVCTCTGI PRQCYKWGSG  240
GWQSSCCTTY LSEYPLPQLP NKRHARLGGR KMSGSVFSRL LTRFAVADRD LSMPIDLKTY  300
WAKHGTNRYI TIK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.91590.0flower| fruit| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in sepal and petal vasculature, in anthers, in young rosette, in the lateral and primary roots, and in the whole ovule. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc01g110470.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2394470.0Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-128j14 map 1, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004230934.10.0protein BASIC PENTACYSTEINE5
RefseqXP_010315340.10.0protein BASIC PENTACYSTEINE5
SwissprotQ8S8C61e-106BPC4_ARATH; Protein BASIC PENTACYSTEINE4
TrEMBLA0A3Q7EU370.0A0A3Q7EU37_SOLLC; Uncharacterized protein
STRINGSolyc01g110470.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA92872128
Representative plantOGRP28411331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21240.21e-108basic pentacysteine 4
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]