PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Solyc01g110310.2.1 | ||||||||
Common Name | LOC101260878 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
||||||||
Family | GATA | ||||||||
Protein Properties | Length: 326aa MW: 35912.3 Da PI: 6.5106 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 59.2 | 5.5e-19 | 243 | 276 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C++C++ kTp+WR gp g+ktLCnaCG++y++ + Solyc01g110310.2.1 243 CTHCQVQKTPQWRAGPLGPKTLCNACGVRYKSGR 276 *******************************987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF016992 | 8.8E-83 | 5 | 321 | IPR016679 | Transcription factor, GATA, plant |
PROSITE profile | PS50114 | 12.308 | 237 | 273 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 1.7E-14 | 237 | 287 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 8.55E-15 | 239 | 300 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.4E-14 | 240 | 274 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 2.08E-13 | 242 | 299 | No hit | No description |
Pfam | PF00320 | 1.0E-16 | 243 | 276 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 243 | 268 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding | ||||
GO:0001085 | Molecular Function | RNA polymerase II transcription factor binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0003682 | Molecular Function | chromatin binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 326 aa Download sequence Send to blast |
MELIEARALK SSFLSDMAMK NTQQVFLDDI WCVTGINNGA SEDFSVDDLL DFSDKDFKDP 60 ELHEDDEKTS FSGSSQKRNS QDSTFSGMES FGSLAGELPI PVDDMENLEW LSQFVDDTPS 120 EFSLLCPTES FKDKTGGFTE SRSEPVVRPV VKKTRVPCFP LPFPVKPRSK RSRQAGRTWS 180 FPSSAVSGDS SSPTSSSYGS SPFPSGFFTN PVYDGDLFCS VEKPPLKKPK KNPSVETGSG 240 RRCTHCQVQK TPQWRAGPLG PKTLCNACGV RYKSGRLFPE YRPACSPTFS LEVHSNSHRK 300 VLEMRRKKET GEGIDSGLAS MISTC* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Les.12547 | 0.0 | callus| cell culture| floral bud| flower| fruit| leaf| trichome |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Solyc01g110310.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004230938.1 | 0.0 | GATA transcription factor 5 | ||||
TrEMBL | A0A3Q7ETJ3 | 0.0 | A0A3Q7ETJ3_SOLLC; GATA transcription factor | ||||
STRING | Solyc01g110310.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1154 | 24 | 81 | Representative plant | OGRP68 | 17 | 287 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G60530.1 | 5e-44 | GATA transcription factor 4 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Solyc01g110310.2.1 |
Entrez Gene | 101260878 |
Publications ? help Back to Top | |||
---|---|---|---|
|