PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc01g109690.1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | MYB_related | ||||||||
Protein Properties | Length: 83aa MW: 9476.49 Da PI: 9.0049 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.5 | 1.7e-09 | 10 | 54 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 +WT++ +l+ +a +q+ ++ +W +ar +g g+++ ++k ++ Solyc01g109690.1.1 10 SWTPQQNKLFERALAQFDKDtpdRWQNVARAVGGGKSADEVKRHY 54 7*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.7E-4 | 4 | 56 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 9.822 | 6 | 62 | IPR017884 | SANT domain |
SMART | SM00717 | 3.1E-7 | 7 | 60 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.48E-12 | 9 | 66 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 5.0E-7 | 10 | 54 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.00E-4 | 11 | 54 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 83 aa Download sequence Send to blast |
MASSSLQSSS WTPQQNKLFE RALAQFDKDT PDRWQNVARA VGGGKSADEV KRHYEILIED 60 LRRIESGRVP LPNYTHEQQR YS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 5e-29 | 1 | 74 | 1 | 73 | RADIALIS |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the micropylar endosperm surrounding globular-stage embryos but no expression was detected elsewhere, including floral tissues. {ECO:0000269|PubMed:17672842}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc01g109690.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004230980.1 | 3e-54 | protein RADIALIS-like 4 | ||||
Swissprot | Q1A173 | 1e-32 | RADL6_ARATH; Protein RADIALIS-like 6 | ||||
TrEMBL | A0A3Q7FDR5 | 2e-54 | A0A3Q7FDR5_SOLLC; Uncharacterized protein | ||||
STRING | Solyc01g109690.1.1 | 3e-55 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA202 | 24 | 231 | Representative plant | OGRP347 | 12 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.1 | 3e-33 | RAD-like 6 |
Link Out ? help Back to Top | |
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Phytozome | Solyc01g109690.1.1 |
Publications ? help Back to Top | |||
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