PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc01g108300.2.1 | ||||||||
Common Name | LOC101243935 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | G2-like | ||||||||
Protein Properties | Length: 406aa MW: 45059.3 Da PI: 8.1463 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 104.8 | 4.9e-33 | 261 | 316 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rFv+a++qLGGs++AtPk+i+elm+v+gLt+++vkSHLQkYRl+ Solyc01g108300.2.1 261 KQRRCWSPELHRRFVDALQQLGGSQVATPKQIRELMQVDGLTNDEVKSHLQKYRLH 316 79****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.3E-30 | 258 | 320 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.362 | 258 | 318 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.19E-18 | 259 | 319 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.4E-27 | 261 | 316 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 5.0E-8 | 263 | 314 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 406 aa Download sequence Send to blast |
MGSIPAELSL DCRPSFIPKS ITDFLRQLSL IRNVPDKLSQ IDDYITRLED EMRKIDAFKR 60 ELPLSVLLVK DAIVALREES MQYRKSRTEP VLEEFIPLKK SSREDTKAEI TKDKDSREKM 120 SWMSSVQLWN SESHCENTDE AINKQQSKSE LKDTQRSPEE GNSSVTEDPF QSCKTMNAAK 180 AFSVPFKGYS GFSVTAVRKD NKDELPGLSL HTPGITKLRE DTVTSGLNSK HSGSRGGLSS 240 VAGCQSNMRT GSLAQQQSSR KQRRCWSPEL HRRFVDALQQ LGGSQVATPK QIRELMQVDG 300 LTNDEVKSHL QKYRLHTRRI PNSQTQPANQ SGVALGNLWM SQGQYGESSK QSSSQSGSPQ 360 GPLHLAGSCG GTSTTVGDSM DEEDDVKSEN HSWKNHVHTS GKVDV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 8e-14 | 261 | 314 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 8e-14 | 261 | 314 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 8e-14 | 261 | 314 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 8e-14 | 261 | 314 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.14809 | 0.0 | flower| fruit| leaf| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc01g108300.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001297051.1 | 0.0 | Myb family transcription factor | ||||
TrEMBL | A0A3Q7EST3 | 0.0 | A0A3Q7EST3_SOLLC; Uncharacterized protein | ||||
STRING | Solyc01g108300.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4361 | 24 | 43 | Representative plant | OGRP2563 | 11 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03500.1 | 5e-58 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc01g108300.2.1 |
Entrez Gene | 101243935 |
Publications ? help Back to Top | |||
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