PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc01g108240.2.1
Common NameLOC101267746
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 296aa    MW: 32668.8 Da    PI: 5.8811
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc01g108240.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.21.3e-20163212255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          y+GVr+++ +g+W+AeIrdp+    + +r++lg+f taeeAa+a+++a+ +++g
  Solyc01g108240.2.1 163 NYRGVRQRP-WGKWAAEIRDPR----KaARVWLGTFTTAEEAARAYDKAAIEFRG 212
                         59*******.**********94....36************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.88E-34162219No hitNo description
PfamPF008475.3E-14163212IPR001471AP2/ERF domain
SuperFamilySSF541713.07E-22163220IPR016177DNA-binding domain
PROSITE profilePS5103224.948163220IPR001471AP2/ERF domain
SMARTSM003802.6E-37163226IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.3E-32163220IPR001471AP2/ERF domain
PRINTSPR003676.6E-12164175IPR001471AP2/ERF domain
PRINTSPR003676.6E-12186202IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MHWLNKRFRQ EAGMNSNSNS LQNNNQFQQQ QPRLTGDEEY SVMVATLKNV INGNIPTQNY  60
QEFNVFSPYN YSTATTTTNV TSSSSPSTSM STSFEQVLGV SAEQEPCQFC RIQGCLGCDI  120
FGTTFSSSSS APAAVAAPVA DNKKKSSSSS TATVAIAKKK KKNYRGVRQR PWGKWAAEIR  180
DPRKAARVWL GTFTTAEEAA RAYDKAAIEF RGPRAKLNFS FADYTVDTQE QQSTLSSSPQ  240
QLPEEPQQSQ TANNNSDYGN EIWDQLMGDN EIQDWLTMMN FNGDSSDSGG NVHSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-23162219159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1142161KKKSSSSSTATVAIAKKKKK
2156162AKKKKKN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.84270.0callus| flower| root
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00469DAPTransfer from AT4G34410Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc01g108240.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004230791.10.0ethylene-responsive transcription factor ERF109
TrEMBLA0A3Q7ESP90.0A0A3Q7ESP9_SOLLC; Uncharacterized protein
STRINGSolyc01g108240.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.11e-25redox responsive transcription factor 1
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]