PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc01g108080.2.1
Common NameLOC101263766
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bZIP
Protein Properties Length: 415aa    MW: 45028.3 Da    PI: 10.2455
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc01g108080.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1414e-13336391559
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHH CS
              bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke.leelkkevakl 59 
                         +r rr++kNRe+A rsR+RK+a++ eLe +v++L++ N++L+k+ +e ++k+  +l
  Solyc01g108080.2.1 336 RRRRRMIKNRESAARSRARKQAYTLELEAEVAKLKEINEELRKKqAEIIEKQKNQL 391
                         689**************************************976134445555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.3E-11332393IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.841334383IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.5E-12336386No hitNo description
SuperFamilySSF579592.81E-9336383No hitNo description
PfamPF001705.0E-11336391IPR004827Basic-leucine zipper domain
PROSITE patternPS000360339354IPR004827Basic-leucine zipper domain
CDDcd147072.83E-22341390No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MGSYMNFKNI TDKPQAESNG GKSVGNGDIP LARQSSIYSL TFDELQTTFS GLGKDFGSIN  60
MEELLKSIWT AEESQAATSS TGGGEDGIAP VGNLQRQGSL TLPRTLSQKT VDEVWRNFQK  120
ETTVCTPDGS ETGKSNFGQR QSTLGEMTLE EFLVKAGVVR EDMQSTSNSS GITFNNGLSQ  180
QNNNNGFNIA FQQPTQNNGL LINQIAANNM LNVVGATASQ QQQPQQQQPL FPKQTTVAFA  240
SPMQLSNNGH LASPRTRAPA VGMSSPSVNA SMAQGGVMGK TGFHNGVSPA KVGSPGNDFI  300
ARSNVDTSSL SPSPYAFSEG GRGRRSGSSL EKVVERRRRR MIKNRESAAR SRARKQAYTL  360
ELEAEVAKLK EINEELRKKQ AEIIEKQKNQ LTDKRNMTCG YKLRCLRRTL TGPW*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, leaves, flowers and siliques but not in seeds. {ECO:0000269|PubMed:11005831, ECO:0000269|PubMed:15361142, ECO:0000269|PubMed:16284313}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in ABA and stress responses and acts as a positive component of glucose signal transduction. Functions as transcriptional activator in the ABA-inducible expression of rd29B. Binds specifically to the ABA-responsive element (ABRE) of the rd29B gene promoter. {ECO:0000269|PubMed:11005831, ECO:0000269|PubMed:15361142, ECO:0000269|PubMed:16284313, ECO:0000269|PubMed:16463099}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00038PBMTransfer from AT4G34000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc01g108080.2.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought, salt, abscisic acid (ABA), cold and glucose. {ECO:0000269|PubMed:10636868, ECO:0000269|PubMed:11005831, ECO:0000269|PubMed:15361142, ECO:0000269|PubMed:16284313, ECO:0000269|PubMed:16463099}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004230778.10.0ABSCISIC ACID-INSENSITIVE 5-like protein 7
SwissprotQ9M7Q44e-99AI5L5_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 5
TrEMBLV5L0710.0V5L071_SOLNI; Abscisic acid-insensitive 5-like protein
STRINGSolyc01g108080.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7762497
Representative plantOGRP39841024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34000.24e-81abscisic acid responsive elements-binding factor 3
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Gao S, et al.
    ABF2, ABF3, and ABF4 Promote ABA-Mediated Chlorophyll Degradation and Leaf Senescence by Transcriptional Activation of Chlorophyll Catabolic Genes and Senescence-Associated Genes in Arabidopsis.
    Mol Plant, 2016. 9(9): p. 1272-1285
    [PMID:27373216]
  3. Seok HY, et al.
    Arabidopsis AtNAP functions as a negative regulator via repression of AREB1 in salt stress response.
    Planta, 2017. 245(2): p. 329-341
    [PMID:27770200]