PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc01g107970.1.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

bHLH

Protein Properties

Length: 305aa MW: 34423.1 Da PI: 8.1398

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc01g107970.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	23	1.5e-07	102	144	8	54
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 Er RR+++++ fe+L l+P++ p K + + i+ +Av+ I++L Solyc01g107970.1.1 102 TERERRKKMRTQFETLHALVPNL---P-AKADMSKIVYEAVNRIRKL 144 6*********************7...3.7888888999999999988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	6.96E-7	92	146	No hit	No description
PROSITE profile	PS50888	11.922	94	144	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.45E-10	94	156	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.3E-9	99	160	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.5E-5	102	144	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:3.30.70.260	8.8E-5	222	284	No hit	No description
SuperFamily	SSF55021	2.29E-5	223	284	No hit	No description
CDD	cd04873	3.21E-5	226	268	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence Send to blast
MNENGENNHD HLCDDIWSYL DWNDHQVVNG ETEGNKLLDP TGSDTCEPLT VINEVVEVSV 60 NVDKKRSSAN RKRNGKEIVE PNSGVDGAEV RRASKHEVRK WTERERRKKM RTQFETLHAL 120 VPNLPAKADM SKIVYEAVNR IRKLKNTFKK LESQKLKRLE EYNIRLTGLQ KVNNSWEKYV 180 GDQGSTCNSI AITPTNHGAS PLIPTGFMTW SSPNVILNVS GEDAHISVCC PKKPRLFTTI 240 CYVLEKHKID IVSAQISSDQ FKSMFMIQAH AKDGSGVAQF SEAFTVEDMY KQVANEIMLM 300 TTPK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc01g107970.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019068450.1	0.0	transcription factor bHLH95-like
TrEMBL	K4B313	0.0	K4B313_SOLLC; Uncharacterized protein
STRING	Solyc01g107970.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1324	23	69
Representative plant	OGRP1226	15	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49770.1	3e-39	bHLH family protein

Link Out ? help Back to Top
Phytozome	Solyc01g107970.1.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]