PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc01g107190.2.1

Common Name

LOC101268035

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

LBD

Protein Properties

Length: 218aa MW: 23707.7 Da PI: 7.3758

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc01g107190.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	94.4	1.3e-29	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 +C++C++lr++C+++C+l++ + ++q++++ +v+k+FG++ ++++l++++e++r+++++sl++eA+ r+ +Pv+Gavg++++++++ Solyc01g107190.2.1 2 SCNGCRILRKGCNENCILRQSLqgiesSHAQANATVFVAKFFGRAGLMSFLTSVSESQRPALFQSLLFEACGRTVNPVHGAVGLLWTGNWH 92 6*******************9998888999******************************************************* PP DUF260 87 leqlkaelall 97 ++q+++e++l Solyc01g107190.2.1 93 VCQSAVETVLK 103 ***998765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	18.636	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.6E-25	2	101	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence Send to blast
MSCNGCRILR KGCNENCILR QSLQGIESSH AQANATVFVA KFFGRAGLMS FLTSVSESQR 60 PALFQSLLFE ACGRTVNPVH GAVGLLWTGN WHVCQSAVET VLKGGVLRPL PEFSGVTASP 120 EFDSEANDVD LFRSQSSNFR SKRKIVDEVS EDLDLGLTSG SSPMVAGGKL NRRTEKRRAA 180 TPSLNSDESD TTTLESGFVY HQNPEQGNET KLLRLFF*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.15023	0.0	callus\| fruit\| leaf\| root

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269\|PubMed:12068116}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc01g107190.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004230706.1	1e-160	LOB domain-containing protein 37
Swissprot	Q9FN11	2e-66	LBD37_ARATH; LOB domain-containing protein 37
TrEMBL	A0A3Q7FCC8	1e-158	A0A3Q7FCC8_SOLLC; Uncharacterized protein
STRING	Solyc01g107190.2.1	1e-159	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA966	24	90
Representative plant	OGRP403	16	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67420.1	9e-69	LOB domain-containing protein 37

Link Out ? help Back to Top
Phytozome	Solyc01g107190.2.1
Entrez Gene	101268035

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465]