PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc01g106940.2.1
Common NameLOC101263059
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB_related
Protein Properties Length: 301aa    MW: 33280.1 Da    PI: 10.2598
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc01g106940.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.72.3e-12555146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                        ++rWT++E+  l+ +v+++G+g W+tI +          R+  ++k++w++
  Solyc01g106940.2.1  5 KQRWTPDEEAALKAGVRKHGPGKWRTILKDPVfsgvlYSRSNVDLKDKWRN 55
                        79************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.243163IPR017930Myb domain
SuperFamilySSF466891.15E-15259IPR009057Homeodomain-like
SMARTSM007175.7E-8459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-14556IPR009057Homeodomain-like
PfamPF002496.8E-9555IPR001005SANT/Myb domain
CDDcd116604.41E-19656No hitNo description
SMARTSM005261.2E-13118183IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467853.75E-15118196IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.3E-13119185IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150421.829120188IPR005818Linker histone H1/H5, domain H15
PfamPF005386.9E-8125181IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0031627Biological Processtelomeric loop formation
GO:0000784Cellular Componentnuclear chromosome, telomeric region
GO:0000786Cellular Componentnucleosome
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MGAPKQRWTP DEEAALKAGV RKHGPGKWRT ILKDPVFSGV LYSRSNVDLK DKWRNMSVMA  60
NGCGSREKAR LALKRMNQAR KQDERSLSVS TEAISDEEMT EARLATTSSD SLQMRGSKRS  120
IIRLDNLIME AISNLKEPGG SNKTTIATYI EDQYWAPTNF KRLLSAKLKY LTATRRLVKM  180
KRKYIIAPTL VLSDRRRIPS VPLLESSQRI SSRVDPDDIN TLTKAQVDFE LTKMRSMTPQ  240
EAAVAAARAV AEAEVAIAEA EDAAREADAA EADAEAAQAF AEAAMKALEG RSIPRMMIHA  300
*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.169400.0fruit| leaf
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000269|PubMed:19102728}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc01g106940.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2331350.0Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-92h13 map 1, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004230688.10.0telomere repeat-binding factor 1
SwissprotQ8VWK42e-91TRB1_ARATH; Telomere repeat-binding factor 1
TrEMBLA0A3Q7ES110.0A0A3Q7ES11_SOLLC; Uncharacterized protein
STRINGSolyc01g106940.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28642448
Representative plantOGRP8551659
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.39e-91telomere repeat binding factor 1
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Alexandrov NN, et al.
    Features of Arabidopsis genes and genome discovered using full-length cDNAs.
    Plant Mol. Biol., 2006. 60(1): p. 69-85
    [PMID:16463100]
  3. Schrumpfová PP, et al.
    Telomere repeat binding proteins are functional components of Arabidopsis telomeres and interact with telomerase.
    Plant J., 2014. 77(5): p. 770-81
    [PMID:24397874]
  4. Liang SC, et al.
    Kicking against the PRCs - A Domesticated Transposase Antagonises Silencing Mediated by Polycomb Group Proteins and Is an Accessory Component of Polycomb Repressive Complex 2.
    PLoS Genet., 2015. 11(12): p. e1005660
    [PMID:26642436]
  5. Fulcher N,Riha K
    Using Centromere Mediated Genome Elimination to Elucidate the Functional Redundancy of Candidate Telomere Binding Proteins in Arabidopsis thaliana.
    Front Genet, 2015. 6: p. 349
    [PMID:26779251]
  6. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]