PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Solyc01g106720.1.1 | ||||||||
Common Name | LOC101252829 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 212aa MW: 23531.2 Da PI: 10.3481 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 63.6 | 2.1e-20 | 18 | 63 | 4 | 49 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 + +sn vtfskRr g++KKA+EL++LC++e+a+++fs+ k++ + Solyc01g106720.1.1 18 SKESNLLVTFSKRRSGLFKKASELCTLCGVEIAIVVFSPGHKVFSF 63 6678999********************************9999877 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 22.105 | 7 | 67 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.0E-28 | 7 | 66 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.7E-25 | 8 | 92 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.5E-16 | 9 | 29 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.5E-22 | 17 | 63 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.5E-16 | 29 | 44 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.5E-16 | 44 | 65 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009960 | Biological Process | endosperm development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 212 aa Download sequence Send to blast |
MAKKMSKGRQ KIQMTKMSKE SNLLVTFSKR RSGLFKKASE LCTLCGVEIA IVVFSPGHKV 60 FSFGHPNVDS IVNRFLTRNP TSSSSTTCQL VEAHRNANVR ELNAQLTEIL NQLEFEKKRE 120 VEIEKIQKGK IGKNWWEGPL NELEHGELEQ LKLGMEELKK NVTKQMQKII FEASNAPTFF 180 LGGSSSSNGD VKNMKGLGLS MATNGGHTSF P* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3kov_A | 7e-18 | 8 | 93 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3kov_B | 7e-18 | 8 | 93 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3kov_I | 7e-18 | 8 | 93 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3kov_J | 7e-18 | 8 | 93 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3p57_A | 7e-18 | 8 | 93 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3p57_B | 7e-18 | 8 | 93 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3p57_C | 7e-18 | 8 | 93 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3p57_D | 7e-18 | 8 | 93 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3p57_I | 7e-18 | 8 | 93 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3p57_J | 7e-18 | 8 | 93 | 1 | 86 | Myocyte-specific enhancer factor 2A |
5f28_A | 8e-18 | 8 | 93 | 2 | 87 | MEF2C |
5f28_B | 8e-18 | 8 | 93 | 2 | 87 | MEF2C |
5f28_C | 8e-18 | 8 | 93 | 2 | 87 | MEF2C |
5f28_D | 8e-18 | 8 | 93 | 2 | 87 | MEF2C |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed during the syncytial endosperm development. {ECO:0000269|PubMed:18334668}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the endosperm but not in the embryo. Detected in young siliques, roots, leaves, stems, young flowers and anthers. {ECO:0000269|PubMed:18334668}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Solyc01g106720.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC240204 | 0.0 | Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-33m2 map 1, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004231379.1 | 1e-153 | agamous-like MADS-box protein AGL62 | ||||
Swissprot | Q9FKK2 | 1e-64 | AGL62_ARATH; Agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A0V0H2C1 | 1e-144 | A0A0V0H2C1_SOLCH; Putative agamous-like MADS-box protein AGL62-like (Fragment) | ||||
STRING | Solyc01g106720.1.1 | 1e-153 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA204 | 24 | 223 | Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G60440.1 | 8e-63 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Solyc01g106720.1.1 |
Entrez Gene | 101252829 |