PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc01g106700.2.1
Common NameLOC101252236
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 214aa    MW: 24279.5 Da    PI: 7.3452
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc01g106700.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF61.41e-191968149
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-.TTSEEEEE CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifs.stgklyey 49
                        k+i+n+  r+vtfskRr g++KKA+EL++L +ae+a+++ s ++++l+++
  Solyc01g106700.2.1 19 KPIDNQNSRHVTFSKRRLGLFKKASELCILSGAEIAILVQSlKRQRLFTF 68
                        78*************************************99567889888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.5E-241171IPR002100Transcription factor, MADS-box
PROSITE profilePS5006620.4231159IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.36E-221282IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-111333IPR002100Transcription factor, MADS-box
PfamPF003196.8E-192168IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-113348IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MTTINAVKKT QGRRKIAIKP IDNQNSRHVT FSKRRLGLFK KASELCILSG AEIAILVQSL  60
KRQRLFTFGH PSPDAVIDRY LTGKSVSPGD GDQFNLQQSN QYYSQICRDL ELEKQKKENI  120
EESKMVNNGG FWWNEPIDDM GIEGLEEFMS ALEELKKKVT MRADELSMIN GSSSNSTMKI  180
ARFGAEDQYF NESIDYCSSI VPFDFNQPGD RQF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc01g106700.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2402040.0Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-33m2 map 1, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004231377.11e-159agamous-like MADS-box protein AGL62
TrEMBLA0A3Q7ERW31e-158A0A3Q7ERW3_SOLLC; Uncharacterized protein
STRINGSolyc01g106700.2.11e-158(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21342252
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.18e-41AGAMOUS-like 62
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]