PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc01g106040.2.1 | ||||||||
Common Name | LOC101247269 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | GATA | ||||||||
Protein Properties | Length: 379aa MW: 41204.8 Da PI: 4.8449 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 52.2 | 8.5e-17 | 218 | 254 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cgt + Tp +Rrgp+g++tLCnaCGl+++ kg+ Solyc01g106040.2.1 218 CHHCGTNEseTPAMRRGPSGPRTLCNACGLMWANKGM 254 ********9************************9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51320 | 14.208 | 80 | 115 | IPR010399 | Tify domain |
SMART | SM00979 | 8.1E-10 | 80 | 115 | IPR010399 | Tify domain |
Pfam | PF06200 | 3.4E-12 | 83 | 114 | IPR010399 | Tify domain |
Pfam | PF06203 | 2.4E-15 | 149 | 190 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 12.838 | 149 | 191 | IPR010402 | CCT domain |
SuperFamily | SSF57716 | 3.28E-12 | 211 | 263 | No hit | No description |
SMART | SM00401 | 2.4E-9 | 212 | 263 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 3.8E-15 | 216 | 258 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE profile | PS50114 | 8.59 | 216 | 260 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 3.16E-16 | 217 | 261 | No hit | No description |
Pfam | PF00320 | 7.9E-14 | 218 | 253 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 218 | 245 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding | ||||
GO:0001085 | Molecular Function | RNA polymerase II transcription factor binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0003682 | Molecular Function | chromatin binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 379 aa Download sequence Send to blast |
MEAADNSRKM VGGQYGVVAF QQEYVNVPIR VDRYGGGGFE AHDISVGGGY EEAMSSGEEL 60 QVCSMPLVAG PVDSGRVMAV SSRTSELTIS FEGQVYVFPA VTPEKVQAVM LLLGGCDVPS 120 YVPNSNSVAL PSTKSVENDV PTRQNISPRM ASLIRFREKR KDRCFEKTIR YACRKEVAQR 180 MHRKNGQFAS LKEGGKSSAD NIDSGDSAAQ SEPTLRRCHH CGTNESETPA MRRGPSGPRT 240 LCNACGLMWA NKGMFRDITK GGSHVPFDKN EPGTPDIKLS TFAPENSYLK QHQEGSSGET 300 KLTEENPSVT TAELDMQEAA ENFADSSPFR IRSSSVNIDD EDNLDELANA SGTEFEIPAD 360 FDEQIGIDSH MSVHWPVT* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:14966217}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc01g106040.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC233128 | 1e-178 | Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-245n21 map 1, complete sequence | |||
GenBank | AC240866 | 1e-178 | Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-210o18 map 1, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010315138.1 | 0.0 | GATA transcription factor 19-like isoform X2 | ||||
Swissprot | Q8H1G0 | 2e-59 | GAT28_ARATH; GATA transcription factor 28 | ||||
TrEMBL | A0A3Q7ESU5 | 0.0 | A0A3Q7ESU5_SOLLC; Uncharacterized protein | ||||
STRING | Solyc01g106040.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5602 | 20 | 35 | Representative plant | OGRP831 | 16 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51600.2 | 1e-61 | ZIM-LIKE 2 |
Link Out ? help Back to Top | |
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Phytozome | Solyc01g106040.2.1 |
Entrez Gene | 101247269 |
Publications ? help Back to Top | |||
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