PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc01g104550.2.1

Common Name

LOC101261463

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

WRKY

Protein Properties

Length: 476aa MW: 52984.4 Da PI: 6.549

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc01g104550.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	90.6	1.3e-28	225	285	1	59
---SS-EEEEEEE--TT-S.S-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgse.fprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kgs+ +pr+YYrCt a gCpv+k+v+r+ ed +++++tYeg+Hnh+ Solyc01g104550.2.1 225 MNDGCQWRKYGQKIAKGSPnCPRAYYRCTVApGCPVRKQVQRCLEDMSILITTYEGTHNHP 285 58*************9736*****99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	6.5E-31	210	287	IPR003657	WRKY domain
SuperFamily	SSF118290	1.83E-25	218	287	IPR003657	WRKY domain
PROSITE profile	PS50811	26.911	220	287	IPR003657	WRKY domain
SMART	SM00774	2.3E-35	225	286	IPR003657	WRKY domain
Pfam	PF03106	8.6E-26	226	285	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 476 aa Download sequence Send to blast
MENNKSENDN EVEIDLSLKL DAREEENEEN QIVESSQLNE KTQPKDQELP KTHEELSMLE 60 KEMKRMKEEN KVLRKAVEQT MKDYYDLQAK FSIHQNNHKD HKSFLSLSGN DDTNEGQTKV 120 PKILDILNTN RISSPTSLED DTMDGDHELG LSLTLVSSNS TTSSKLVEIL EEDQRKEKKD 180 HPSINHQLQN KPQNLGGLTS HVTTASPPNR KSRVSVRARC ESATMNDGCQ WRKYGQKIAK 240 GSPNCPRAYY RCTVAPGCPV RKQVQRCLED MSILITTYEG THNHPLPVGA TAMASTASAA 300 ASFMLVDSSI SPLLNHNSNL NQPLNFPNYH HNLAPNYHHS SSSSPYNNFS NLRTNILNSS 360 DPNNSSQGNL VLDLTKNMSN NNHQFPFASS SSNNHEIGHS NWMSKLSNYE GNNLFSGPKL 420 QGEHNNNNNN NNNIPPMLAH ENMSAIASDP KFRVAVAAAI SSLINKDQSH STGES*

Sequence ? help Back to Top

Protein Sequence Length: 476 aa Download sequence Send to blast

MENNKSENDN EVEIDLSLKL DAREEENEEN QIVESSQLNE KTQPKDQELP KTHEELSMLE  60
KEMKRMKEEN KVLRKAVEQT MKDYYDLQAK FSIHQNNHKD HKSFLSLSGN DDTNEGQTKV  120
PKILDILNTN RISSPTSLED DTMDGDHELG LSLTLVSSNS TTSSKLVEIL EEDQRKEKKD  180
HPSINHQLQN KPQNLGGLTS HVTTASPPNR KSRVSVRARC ESATMNDGCQ WRKYGQKIAK  240
GSPNCPRAYY RCTVAPGCPV RKQVQRCLED MSILITTYEG THNHPLPVGA TAMASTASAA  300
ASFMLVDSSI SPLLNHNSNL NQPLNFPNYH HNLAPNYHHS SSSSPYNNFS NLRTNILNSS  360
DPNNSSQGNL VLDLTKNMSN NNHQFPFASS SSNNHEIGHS NWMSKLSNYE GNNLFSGPKL  420
QGEHNNNNNN NNNIPPMLAH ENMSAIASDP KFRVAVAAAI SSLINKDQSH STGES*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	4e-21	212	289	1	76	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc01g104550.2.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by potassium deprivation. {ECO:0000269\|PubMed:15173595}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004230606.1	0.0	probable WRKY transcription factor 9
Swissprot	Q9C9F0	8e-72	WRKY9_ARATH; Probable WRKY transcription factor 9
TrEMBL	A0A3Q7FAR1	0.0	A0A3Q7FAR1_SOLLC; Uncharacterized protein
STRING	Solyc01g104550.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7287	21	29
Representative plant	OGRP14	17	875

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68150.1	2e-58	WRKY DNA-binding protein 9

Link Out ? help Back to Top
Phytozome	Solyc01g104550.2.1
Entrez Gene	101261463

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]