PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc01g103870.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 126aa    MW: 14435.6 Da    PI: 9.5372
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc01g103870.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF43.25.1e-141662450
                        -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
              SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                        + k+n++ ++  R++ i  K  EL +LCd++v+ +i +++ +l++++
  Solyc01g103870.1.1 16 KKKTNNSKSYQVRKECIKRKSMELATLCDIKVCTVITGPNRELQTWP 62
                        5799******************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554558.37E-151188IPR002100Transcription factor, MADS-box
PROSITE profilePS500668.8581661IPR002100Transcription factor, MADS-box
PfamPF003191.3E-91761IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
MADEDQSKKG EEDQRKKKTN NSKSYQVRKE CIKRKSMELA TLCDIKVCTV ITGPNRELQT  60
WPDNLNACKE VLDIYSQNLK PEKKHKQEDK DLPTLVESKL AAVNRRICFL ENKNVADKGK  120
GKRIE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc01g103870.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2461050.0Solanum lycopersicum strain Heinz 1706 chromosome 1 clone slm-15l21 map 1, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015082095.22e-78agamous-like MADS-box protein AGL75
TrEMBLM1CBP77e-65M1CBP7_SOLTU; Uncharacterized protein
STRINGSolyc01g103870.1.12e-86(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37231639
Representative plantOGRP1580123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39810.13e-10AGAMOUS-like 98
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]