PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc01g102740.2.1 | ||||||||
Common Name | LOC101250453 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | NAC | ||||||||
Protein Properties | Length: 414aa MW: 46927.9 Da PI: 6.6308 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 160.6 | 5.9e-50 | 51 | 176 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 +pGfrFhPt+eelv +yL++kvegk++++ e i+ +d+y+++Pw+Lp+ ++ +ekewyf+++rd+ky++g+r+nr+t+sgyWkatg d+ + Solyc01g102740.2.1 51 MPGFRFHPTEEELVEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPALAAIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMI 140 79***************************.89***************8778899************************************* PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++++ +glkktLvfy+g+apkg +++W+m+eyrl Solyc01g102740.2.1 141 RTENSRSIGLKKTLVFYSGKAPKGIRSSWIMNEYRL 176 **********************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 56.002 | 50 | 197 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.11E-55 | 50 | 196 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.8E-25 | 52 | 176 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 414 aa Download sequence Send to blast |
MAIVPFITTN MSQSQQQHQQ QQDDDDNNNI NNTIKGDDND DDDDHEHDMV MPGFRFHPTE 60 EELVEFYLRR KVEGKRFNVE LITFLDLYRY DPWELPALAA IGEKEWYFYV PRDRKYRNGD 120 RPNRVTTSGY WKATGADRMI RTENSRSIGL KKTLVFYSGK APKGIRSSWI MNEYRLPHHE 180 TERLQKAEIS LCRVYKRAGV EDHPSLPRSL LTTRASSSSS SRGTTPIKKQ QVAQQDSSLI 240 SPLYLGQSSQ QQIDEKLSTE TSASSTSTDH HHHHQHHVAT SLGLNSLSNS YTNIALDPIG 300 SAVNITTSTL TPFTSLVATT NNTTDDLHRL INLDQVVAFH NNQHHFHPPP GVVPQQYPPP 360 LLLQQPQSLL HQGSLPSSAA AAFSDRLWEW NSINQTDGSC KDDHYDQGNN PFK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 6e-56 | 52 | 197 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-56 | 52 | 197 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-56 | 52 | 197 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-56 | 52 | 197 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
4dul_A | 6e-56 | 52 | 197 | 19 | 165 | NAC domain-containing protein 19 |
4dul_B | 6e-56 | 52 | 197 | 19 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.20965 | 0.0 | cell culture| leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in aerial organs in early stages of seedling development. {ECO:0000269|PubMed:17653269}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269|PubMed:17653269}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00257 | DAP | Transfer from AT2G02450 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc01g102740.2.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269|PubMed:17653269}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC246255 | 0.0 | Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-65j3 map 1, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004230395.1 | 0.0 | NAC domain-containing protein 35 isoform X2 | ||||
Swissprot | Q9ZVP8 | 1e-115 | NAC35_ARATH; NAC domain-containing protein 35 | ||||
TrEMBL | A0A3Q7F9J5 | 0.0 | A0A3Q7F9J5_SOLLC; Uncharacterized protein | ||||
STRING | Solyc01g102740.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3888 | 24 | 46 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02450.2 | 1e-109 | NAC domain containing protein 35 |
Link Out ? help Back to Top | |
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Phytozome | Solyc01g102740.2.1 |
Entrez Gene | 101250453 |
Publications ? help Back to Top | |||
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