PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc01g100990.2.1
Common NameLOC101259582
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C3H
Protein Properties Length: 151aa    MW: 16845.7 Da    PI: 8.2041
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc01g100990.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.21.8e-105880527
                        --SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH  5 lCrffartGtCkyGdrCkFaHgp 27
                         C++f rtG+C+yGd+Ck+ H++
  Solyc01g100990.2.1 58 VCNHFVRTGYCQYGDSCKYYHPK 80
                        6********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004513.0E-4338IPR003604Zinc finger, U1-type
SuperFamilySSF576672.23E-15453No hitNo description
PfamPF062201.4E-9538IPR013085Zinc finger, U1-C type
SMARTSM003564.1E-55380IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.2065381IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.06E-75681IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-85880IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.6E-75879IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MPLGKYYCDY CDKEFQDTAA ARRRHLQGVQ HQRAKALWYD SLRNPQLFND PDSFGKGVCN  60
HFVRTGYCQY GDSCKYYHPK QNPQTVNQTG LPPGENSREG FHSSSQPFGS ASFPGDVFRE  120
KAGASLSNLP PSLRPPPEGG YPPLPFVEWG *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.124700.0fruit
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc01g100990.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2389104e-67Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-131o24 map 1, complete sequence
GenBankAC2389484e-67Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-1h15 map 1, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025888736.11e-109zinc finger CCCH domain-containing protein 3 isoform X2
SwissprotQ0JP115e-47C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3
TrEMBLA0A3Q7ENY21e-108A0A3Q7ENY2_SOLLC; Uncharacterized protein
STRINGSolyc01g100990.2.11e-108(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA120081821
Representative plantOGRP85391213
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26749.15e-31C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]