PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc01g100220.2.1 | ||||||||
Common Name | LOC101266764 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | GATA | ||||||||
Protein Properties | Length: 150aa MW: 16112.9 Da PI: 10.6253 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 64.6 | 1.1e-20 | 21 | 55 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 Cs C+ttkTplWR+gp+g+k+LCnaCG++yrkk++ Solyc01g100220.2.1 21 CSDCKTTKTPLWRSGPSGPKSLCNACGIKYRKKKS 55 ********************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57716 | 5.23E-14 | 15 | 55 | No hit | No description |
SMART | SM00401 | 1.1E-16 | 15 | 66 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 13.02 | 15 | 51 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 2.5E-17 | 19 | 55 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 5.43E-15 | 20 | 71 | No hit | No description |
Pfam | PF00320 | 1.3E-18 | 21 | 54 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 21 | 46 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding | ||||
GO:0001085 | Molecular Function | RNA polymerase II transcription factor binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0003682 | Molecular Function | chromatin binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 150 aa Download sequence Send to blast |
MDPNQKDESS GSEATGISKS CSDCKTTKTP LWRSGPSGPK SLCNACGIKY RKKKSSPIGL 60 TKGATKKKEK PLSNSGSTEE VEYCKKGKMG NGKKDGKLSK VLRVKLMMLG KEVVILQRQR 120 SAMKKPRKLD EVERAAVLLM ALSCGSVFG* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.6509 | 0.0 | flower| fruit| leaf |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc01g100220.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC238503 | 0.0 | Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-10f3 map 1, complete sequence | |||
GenBank | AC238920 | 0.0 | Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-222e21 map 1, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004230282.1 | 1e-102 | GATA transcription factor 16 | ||||
TrEMBL | A0A3Q7F8I6 | 1e-101 | A0A3Q7F8I6_SOLLC; Uncharacterized protein | ||||
STRING | Solyc01g100220.2.1 | 1e-102 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12750 | 17 | 21 | Representative plant | OGRP68 | 17 | 287 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49300.1 | 5e-24 | GATA transcription factor 16 |
Link Out ? help Back to Top | |
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Phytozome | Solyc01g100220.2.1 |
Entrez Gene | 101266764 |
Publications ? help Back to Top | |||
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