PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc01g098720.2.1 | ||||||||
Common Name | LOC101259290 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | bHLH | ||||||||
Protein Properties | Length: 329aa MW: 37495.8 Da PI: 4.9989 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 46.7 | 5.6e-15 | 123 | 174 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r +h ++Er+RR+++N+ ++ Lr+l+P++ + ++ + a+i+ A++Y+k+L+ Solyc01g098720.2.1 123 QRITHIAVERNRRKQMNDYLSVLRTLMPES---YVQRGDQASIVSGAINYVKELE 174 799***************************...9******************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.09E-14 | 121 | 178 | No hit | No description |
SuperFamily | SSF47459 | 1.44E-17 | 122 | 191 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.593 | 122 | 173 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.9E-15 | 122 | 178 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.4E-12 | 123 | 174 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.2E-11 | 128 | 179 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
MALEAITQQQ QYLYALLGTT NWSIDSGSDY YNNNEFVPNH QNVTAPQEYE DYSNWNLPAP 60 LLVDSQNEFH QWGQNCSSVL DHNFTIVDQQ EQLESPIEMS SSTTRPRRRR TRTKKNDEEI 120 ENQRITHIAV ERNRRKQMND YLSVLRTLMP ESYVQRGDQA SIVSGAINYV KELEQQLQFL 180 SGKKHLTSQN QEANGETSPF SEFFSIPQYS TTITAAAAAT TTSENVCCEN EYYRNQQLPA 240 TADIEVTMVE NHANLKIRSK KRPRLLPTII SGLESLRLTV LHLNVSKVDQ FVLCSLSLKV 300 EEDCKMNSVE DIAAVVNQIL SRIHEEAN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 104 | 111 | RPRRRRTR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.11141 | 0.0 | callus |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc01g098720.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC233133 | 0.0 | Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-57c7 map 1, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004230172.1 | 0.0 | transcription factor bHLH96-like | ||||
Swissprot | Q9C7T4 | 5e-73 | BH096_ARATH; Transcription factor bHLH96 | ||||
TrEMBL | A0A3Q7EN26 | 0.0 | A0A3Q7EN26_SOLLC; Uncharacterized protein | ||||
STRING | Solyc01g098720.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13227 | 15 | 18 | Representative plant | OGRP253 | 15 | 131 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72210.1 | 2e-71 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc01g098720.2.1 |
Entrez Gene | 101259290 |
Publications ? help Back to Top | |||
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