PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc01g095630.2.1 | ||||||||
Common Name | WRKY3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | WRKY | ||||||||
Protein Properties | Length: 337aa MW: 37727.5 Da PI: 5.4922 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 85.3 | 5.5e-27 | 137 | 197 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK++ g+ +pr+YYrCt++ gC ++k+v++s+ + +++e+tY+g+H ++ Solyc01g095630.2.1 137 EDGFSWRKYGQKDILGASHPRAYYRCTHRntqGCLATKQVQKSDANSTIFEVTYKGRHSCK 197 8***************************98889*************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.2E-26 | 129 | 198 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.02E-23 | 135 | 198 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.2E-37 | 136 | 198 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.0E-25 | 137 | 197 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 21.941 | 137 | 199 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 337 aa Download sequence Send to blast |
MEKVKSMEKK KLINELTQGK EFVNQLKNQI IGPLASPEEC DLLIGKILST LEKSLSILNL 60 KALLLEGGIN NINNSTSSCS SISFLGSSNN NISPKSEVFD SSREKLDKNM VSKKRKKTQQ 120 WINQTSISVN GLEGPCEDGF SWRKYGQKDI LGASHPRAYY RCTHRNTQGC LATKQVQKSD 180 ANSTIFEVTY KGRHSCKVAQ SEIFSLNNQK RQKCNKKQQE EMVIFNSATP NHNAENFNII 240 TAKDEEVFTA FPFPPAPLHI ENIIEENKFF PDSSELPLYL ASPNDEFGME HMILQSSDSD 300 LTELISTPTS ISNSSFGGEG VDYEPEITFD IEEFFI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 3e-18 | 137 | 197 | 9 | 69 | OsWRKY45 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 112 | 116 | KKRKK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.25541 | 0.0 | callus| flower| fruit| leaf| root |
Function -- GeneRIF ? help Back to Top | ||||||
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc01g095630.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GU454585 | 0.0 | Solanum lycopersicum WRKY transcription factor (WRKY3) mRNA, complete cds |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001234530.1 | 0.0 | WRKY transcription factor 41 | ||||
TrEMBL | D3YEX5 | 0.0 | D3YEX5_SOLLC; WRKY transcription factor | ||||
STRING | Solyc01g095630.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5553 | 22 | 37 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11070.2 | 2e-38 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc01g095630.2.1 |
Entrez Gene | 100736444 |
Publications ? help Back to Top | |||
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