PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc01g095460.2.1
Common NameLOC101249493
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bZIP
Protein Properties Length: 419aa    MW: 44659.3 Da    PI: 5.9842
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc01g095460.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_169.74.5e-22275337163
                         XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                         e+elkre+rkq+NRe+ArrsR+RK+ae eeL+ +v++L++eN +L++e+++l ++++klk ++
  Solyc01g095460.2.1 275 ERELKREKRKQSNRESARRSRLRKQAEAEELAIRVQALTGENLTLRSEINKLMENSEKLKLDN 337
                         89**********************************************************887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077771.6E-37192IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165961.0E-36130255No hitNo description
Gene3DG3DSA:1.20.5.1705.7E-16269334No hitNo description
SMARTSM003381.3E-18275339IPR004827Basic-leucine zipper domain
PfamPF001706.1E-21275337IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.392277340IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.13E-10278334No hitNo description
CDDcd147027.45E-20280328No hitNo description
PROSITE patternPS000360282297IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MGNSEDGKSC KLEKPSSPAA DQSNRHVYPD WAAMQAYYGP RVAVPAYFNS AVAPGHTPHP  60
YMWGPQPMVP PYGTPYAAIY AHGGVYAHPG VPIGSHPPGH VMATSPVVSQ AMDGASLSLD  120
ASAKSSGNSD RGLMSKLKEF EGLAMSLGNG STDNVEGGTD NGHSQSGETE GSTDGSDTNG  180
AGVSERTKKR SCETTPDNSG DDKSHSQRFQ PTGEVNDDAE KAIVVAAKMT GTVLSPCMTT  240
LEMRNPASAH MKSSPTNGGS PLSPALPNET WLQNERELKR EKRKQSNRES ARRSRLRKQA  300
EAEELAIRVQ ALTGENLTLR SEINKLMENS EKLKLDNATL MERLKNEQLG QTEEVSLGKI  360
DDKRLQPVGT VNLLARVNNS GSSDTTNEDG EVYENNSSGA KLHQLLDTSP RTDAVAAG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1291297RRSRLRK
2291298RRSRLRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.51290.0callus| flower| fruit| leaf| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Present mainly in roots. Barely detectable in stems and leaves.
Functional Description ? help Back to Top
Source Description
UniProtTrans-activator of a beta-glucuronidase (GUS) reporter gene. Binds to a G-box-related element, (5'-GCAACGTGGC-3'). Also binds to the HEX-motif of wheat histone H3 promoter.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00318DAPTransfer from AT2G46270Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc01g095460.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0133410.0Lycopersicon esculentum clone 135142F, mRNA sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004229974.10.0transcriptional activator TAF-1 isoform X4
RefseqXP_025887867.10.0transcriptional activator TAF-1 isoform X2
SwissprotQ991421e-147TAF1_TOBAC; Transcriptional activator TAF-1 (Fragment)
TrEMBLA0A3Q7ELE70.0A0A3Q7ELE7_SOLLC; Uncharacterized protein
STRINGSolyc01g095460.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31132447
Representative plantOGRP43461123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.11e-114G-box binding factor 3
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Oeda K,Salinas J,Chua NH
    A tobacco bZip transcription activator (TAF-1) binds to a G-box-like motif conserved in plant genes.
    EMBO J., 1991. 10(7): p. 1793-802
    [PMID:2050116]