PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc01g095030.2.1 | ||||||||
Common Name | LOC101257705 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | MYB_related | ||||||||
Protein Properties | Length: 332aa MW: 37039 Da PI: 9.9612 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 42.4 | 1.6e-13 | 68 | 112 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT++E++++++a +++ + Wk+I + +g +t q++s+ qky Solyc01g095030.2.1 68 RESWTEQEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 112 789*****************77.*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.05E-16 | 62 | 118 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.408 | 63 | 117 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 1.5E-18 | 66 | 115 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 1.1E-6 | 66 | 118 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.3E-11 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.7E-11 | 68 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.05E-8 | 70 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 332 aa Download sequence Send to blast |
MVSVYPTPPG QDFHYMGDPM KTGLMGLHPV QSGTSIHGNL NLDSNTGLVV SDDHSKKTRK 60 PYTITKSRES WTEQEHDKFL EALQLFDRDW KKIEAFVGSK TVIQIRSHAQ KYFLKVQKSG 120 TSEHVPPPRP KRKASHPYPQ KAPKKVISQV GSIQFQPPGA LPVPGFGIGP DPLSVPGNTI 180 NFSPWTYDNV PAISTIQTRK DDAQLSSGGV KQNCSSSSNE NNPRINKTKE SNDQNESQKQ 240 MKVMPDFAQV YSFIGSVFDP STRDHLQRLK KMDPIDIQTA LMLMKNLSFN LSSPEFEDHR 300 RMLSSYGLGA EKDKMDLPIK SDFRGNAIRA I* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.17275 | 0.0 | fruit |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Function -- GeneRIF ? help Back to Top | ||||||
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc01g095030.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001340693.1 | 0.0 | R1-MYB type transcription factor ARS1 | ||||
Swissprot | Q8H0W3 | 7e-98 | RVE6_ARATH; Protein REVEILLE 6 | ||||
TrEMBL | A0A3Q7EM19 | 0.0 | A0A3Q7EM19_SOLLC; Uncharacterized protein | ||||
STRING | Solyc01g095030.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA998 | 24 | 78 | Representative plant | OGRP928 | 15 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52660.2 | 1e-100 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc01g095030.2.1 |
Entrez Gene | 101257705 |
Publications ? help Back to Top | |||
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